Skip navigation

About IDEA Center

News & Events

Membership

Resources

IDEA Student Clubs

Search

Contact Us

Home


Resources

Inaccurate Discussion: A Response to Scott LaFee's "Intelligent Discussion" (Union Tribune, June 8, 2005) [Long Version]

by IDEA Center Staff (First Posted July 7, 2005)

Fake Cover of the Union Tribune

Pictured above is a FAKE cover of the San Diego Union Tribune, which in reality actually did publish an inaccurate article against intelligent design on June 8th, 2005. The article only interviewed scientists who were anti-ID and contained no quotes from pro-ID scientists or organizations. Many of the statements by the scientists contained inaccuracies about intelligent design, raising reasonable suspicion as to whether some of them were adequately informed about intelligent design.

The above graphic incorporates a modified version of "The Scientists" by cartoonist Lee Bullen. Used with permission.
Introduction:
One of the foundational tenets of the IDEA Philosophy is to value dialogue, discussion, and exchange with those who are critical of intelligent design. We at the IDEA Center were pleased to see that the Union Tribune covered intelligent design. However, we were saddened that they chose to only interview scientists who were anti-ID, and that the article did not seek dialogue, discussion, and exchange with scientists or organizations holding pro-ID viewpoints.

We were also saddened and concerned that many of the statements about intelligent design in the article were highly inaccurate. Thus, we have composed this response with the purpose of helping to correct much of the misinformation about intelligent design in "Intelligent Discussion" by Scott Lafee (Union Tribune, June 8, 2005). Additionally, the IDEA Center is sponsoring a series of Intelligent Design Video Nights at the Chula Vista Public Library, where the public will have an opportunity to freely view 3 intelligent design videos. This will help correct some of the misinformation in the article about intelligent design theory.

The grey boxes contain quotes from “Intelligent Discussion,” followed by commentary and documentation correcting the various inaccurate statements.  This response is a collective effort contributed to by various IDEA Center staff.

Quick Navigation:

Response to comments by...
  • Scott LaFee
  • Phil Unitt
  • Christopher Wills
  • Exequiel Ezcurra
  • Evan Snyder
  • Jeffrey Bada
  • Moselio Schaechter
  • Mark Tuszynski
  • Joshua Fierer
  • Ajit P. Varki
  • J. David Archibald
  • Tom Demere
  • Michael Mayer
  • Michael Simpson
  • Commentary and Response:

    Response to Comments by Scott LaFee:

    “The new challenge comes from proponents of "intelligent design," which argues that there are things in the world – namely, life – that defy scientific explanation and can only be attributed to the handiwork of an unidentified, supernatural creator.” (Scott LaFee, Union Tribune Staff Science Reporter)


    Response: Unfortunately this statement is not an accurate description of the actual nature of intelligent design theory and how it works.

    I.  This states that intelligent design argues simply that “there are things in the world – namely, life – that defy scientific explanation.” This is an inaccurate characterization for two reasons:

    Intelligent design theory does not simply argue that aspects of life are unevolvable and is not purely an argument against naturalistic processes.  

    The theoretical way we infer design is expounded in detail in The Design Inference (Cambridge University Press, 1998) by William Dembski. An essay by William Dembksi lays out in detail how we can understand the products of intelligent design by examining how designers work: “To see why CSI [complex-specified information] is a reliable indicator of design, we need to examine the nature of intelligent causation. The principal characteristic of intelligent causation is directed contingency, or what we call choice. Whenever an intelligent cause acts, it chooses from a range of competing possibilities. This is true not just of humans, but of animals as well as extra-terrestrial intelligences. A rat navigating a maze must choose whether to go right or left at various points in the maze. When SETI (Search for Extra-Terrestrial Intelligence) researchers attempt to discover intelligence in the extra-terrestrial radio transmissions they are monitoring, they assume an extra-terrestrial intelligence could have chosen any number of possible radio transmissions, and then attempt to match the transmissions they observe with certain patterns as opposed to others (patterns that presumably are markers of intelligence). Whenever a human being utters meaningful speech, a choice is made from a range of possible sound-combinations that might have been uttered. Intelligent causation always entails discrimination, choosing certain things, ruling out others. Given this characterization of intelligent causes, the crucial question is how to recognize their operation. Intelligent causes act by making a choice.

    "CSI is a reliable indicator of design because its recognition coincides with how we recognize intelligent causation generally. In general, to recognize intelligent causation we must establish that one from a range of competing possibilities was actualized, determine which possibilities were excluded, and then specify the possibility that was actualized. What's more, the competing possibilities that were excluded must be live possibilities, sufficiently numerous so that specifying the possibility that was actualized cannot be attributed to chance. In terms of probability, this means that the possibility that was specified is highly improbable. In terms of complexity, this means that the possibility that was specified is highly complex. All the elements in the general scheme for recognizing intelligent causation (i.e., Actualization-Exclusion-Specification) find their counterpart in complex specified information-CSI. CSI pinpoints what we need to be looking for when we detect design."[1]
    Thus, when one reads the actual primary literature of intelligent design proponents, it is quickly and easily clear that intelligent design theory is not simply based upon a critique of other scientific hypotheses, but intelligent design theory puts forth its own positive predictions by which we can infer intelligent design. Above, Dembski notes that intelligent agents can choose from one of many competing possibilities. If the choice made is unlikely to occur and sufficiently complex, then we can attribute that choice to design. This comes from our understanding of how intelligent agents operate--not from a negative argument against Neo-Darwinism.

    Thus, intelligent design theory is not based purely upon a negative critique of Neo-Darwinism.  Indeed, below are discussed 4 positive predictions of intelligent design theory, based upon our observations of how intelligent agents operate:

    Table 1. Ways Designers Act When Designing (Observations): Intelligent agents ...
    (1) Take many parts and arrange them in highly specified and complex patterns which perform a specific function.

    “Experience teaches that information-rich systems … invariably result from intelligent causes, not naturalistic ones. … Finding the best explanation, however, requires invoking causes that have the power to produce the effect in question. When it comes to information, we know of only one such cause. For this reason, the biology of the information age now requires a new science of design."[2]

    “Agents can arrange matter with distant goals in mind. In their use of language, they routinely ‘find’ highly isolated and improbable functional sequences amid vast spaces of combinatorial possibilities.”[3]

    "Indeed, in all cases where we know the causal origin of 'high information content,' experience has shown that intelligent design played a causal role." [4]
    (2) Rapidly infuse any amounts of genetic information into the biosphere, including large amounts, such that at times rapid morphological or genetic changes could occur in populations.

    "Intelligent design provides a sufficient causal explanation for the origin of large amounts of information, since we have considerable experience of intelligent agents generating informational configurations of matter."[5]
    (3) 'Re-use parts' over-and-over in different types of organisms (design upon a common blueprint).

    “An intelligent cause may reuse or redeploy the same module in different systems, without there necessarily being any material or physical connection between those systems. Even more simply, intelligent causes can generate identical patterns independently: We do so, for instance, every time we sign a bank check or credit card slip”[6]
    (4) Be said to typically NOT create completely functionless objects or parts (although we may sometimes think something is functionless, but not realize its true function).

    These observations can then be converted into predictions about what we should find if an object was designed:
    Table 2. Predictions of Design (Hypothesis):
    (1) High information content machine-like irreducibly complex structures will be found.
    (2) Forms will be found in the fossil record that appear suddenly and without any precursors.
    (3) Genes and functional parts will be re-used in different unrelated organisms.
    (4) The genetic code will NOT contain much discarded genetic baggage code or functionless "junk DNA".

    These predictions can then be put to the test by observing the scientific data:
    Table 3. Examining the Evidence (Experiment and Conclusion):
    Line of Evidence
    Data (Experiment)
    Prediction of Design Met? (Conclusion)
    (1) Biochemical complexity / Laws of the Universe. High information content machine-like irreducibly complex structures are commonly found. The bacterial flagellum is a prime example. Specified complexity found in the laws of the universe may be another.
    Yes.
    (2) Fossil Record Biological complexity (i.e. new species) tend to appear in the fossil record suddenly and without any similar precursors. The Cambrian explosion is a prime example.
    Yes.
    (3) Distribution of Molecular and Morphological Characteristics Similar parts found in different organisms. Many genes and functional parts not distributed in a manner predicted by ancestry, and are often found in clearly unrelated organisms. The "root" of the tree of life is a prime example.
    Yes.
    (4) DNA Biochemical and Biological Functionality Increased knowledge of genetics has created a strong trend towards functionality for "junk-DNA." Examples include recently discovered functionality in some pseudogenes, microRNAs, introns, LINE and ALU elements. Examples of DNA of unknown function persist, but discovery of function may be expected (or lack of current function still explainable under a design paradigm).
    Yes.


    In this manner, intelligent design clearly makes a positive argument for intelligent design, as it observes how intelligent agents act when designing (Table 1) in order to make predictions about what we should find if an intelligent agent had been at work (Table 2) , and then goes out and tests those predictions to see if they are met (Table 3)!   It is not simply a critique of Neo-Darwinism.

    B)     Intelligent design does not argue that characteristics of life “defy scientific explanation” because intelligent design itself puts forth a scientific explanation.  Intelligent design simply argues that Neo-Darwinism is the wrong scientific explanation for the origin of many aspects of life—it does not argue that there is no “scientific explanation.”   In contrast, intelligent design theory argues that there IS a scientific explanation: intelligent design.

    2.      The second problem with the first statement above is that it states that intelligent design appeals to a “supernatural creator.”   Again, this is an inaccurate statement about intelligent design theory.  

    Many critics of intelligent design (including your article on ID) have inaccurately stated that intelligent design is an argument for the existence of God, or that it posits an explicitly supernatural creator. The reasons why critics misconstrue intelligent design in this fashion are apparent and twofold:
  • Appealing to God or the supernatural makes intelligent design unscientific because the scientific method cannot detect the supernatural
  • Appealing to God or the supernatural guarantees that intelligent design cannot be taught in public schools since the U.S. Supreme Court declared in 1987 that teaching a "supernatural creator" is religion, and unconstitutional.[7]
  • By calling intelligent design as an appeal to the supernatural, the public has been misled into thinking that intelligent design is both unscientific and unconstitutional to teach. Thankfully, the reality of intelligent design theory is much different from how it was portrayed in the article.

    In reality, intelligent design cannot tell you if the designer was natural, supernatural, cosmic, alien, humanoid, God-like, or anything.  Many intelligent design proponents have beliefs about the identity of the designer, but these beliefs do not stem from intelligent design theory.  

    For example, I personally am a Christian and I believe the identity of the designer is the God of the Bible. However, I do not derive this belief from intelligent design theory. 

    Indeed, science can only study natural objects, and cannot make statements about the supernatural. IF it is correct to state that intelligent design theory appeals to a specifically supernatural creator, then intelligent design would not be scientific. However, the claim that intelligent design theory proposes a supernatural designer, or that it specifically appeals to God, is a mischaracterization of intelligent design theory, and the article is not correct.

    The Actual Arguments of Leading ID Proponents
    An extensive look at the actual writings and arguments of those in the ID research community reveals that intelligent design is not an appeal to the supernatural, nor is it trying to "prove" the existence of God. The consensus of ID proponents is intelligent design theory does not allow one to identify the designer as natural or supernatural, because to do so would go beyond the limits of scientific inquiry.

    Here are some excerpts from ID literature making it clear that ID is not an appeal to God or the supernatural:

    "Intelligent design is modest in what it attributes to the designing intelligence responsible for the specified complexity in nature. For instance, design theorists recognize that the nature, moral character and purposes of this intelligence lie beyond the competence of science and must be left to religion and philosophy."[8]

    "If science is based upon experience, then science tells us the message encoded in DNA must have originated from an intelligent cause. But what kind of intelligent agent was it? On its own, science cannot answer this question; it must leave it to religion and philosophy. But that should not prevent science from acknowledging evidences for an intelligent cause origin wherever they may exist. This is no different, really, than if we discovered life did result from natural causes. We still would not know, from science, if the natural cause was all that was involved, or if the ultimate explanation was beyond nature, and using the natural cause."[9]

    "Surely the intelligent design explanation has unanswered questions of its own. But unanswered questions, which exist on both sides, are an essential part of healthy science; they define the areas of needed research. Questions often expose hidden errors that have impeded the progress of science. For example, the place of intelligent design in science has been troubling for more than a century. That is because on the whole, scientists from within Western culture failed to distinguish between intelligence, which can be recognized by uniform sensory experience, and the supernatural, which cannot. Today we recognize that appeals to intelligent design may be considered in science, as illustrated by current NASA search for extraterrestrial intelligence (SETI). Archaeology has pioneered the development of methods for distinguishing the effects of natural and intelligent causes. We should recognize, however, that if we go further, and conclude that the intelligence responsible for biological origins is outside the universe (supernatural) or within it, we do so without the help of science."[10]

    "The idea that life had an intelligent source is hardly unique to Christian fundamentalism. Advocates of design have included not only Christians and other religious theists, but pantheists, Greek and Enlightenment philosophers and now include many modern scientists who describe themselves as religiously agnostic. Moreover, the concept of design implies absolutely nothing about beliefs and normally associated with Christian fundamentalism, such as a young earth, a global flood, or even the existence of the Christian God. All it implies is that life had an intelligent source."[11]

    "The most important difference [between modern intelligent design theory and Paley's arguments] is that [intelligent design] is limited to design itself; I strongly emphasize that it is not an argument for the existence of a benevolent God, as Paley's was. I hasten to add that I myself do believe in a benevolent God, and I recognize that philosophy and theology may be able to extend the argument. But a scientific argument for design in biology does not reach that far. This while I argue for design, the question of the identity of the designer is left open. Possible candidates for the role of designer include: the God of Christianity; an angel--fallen or not; Plato's demi-urge; some mystical new age force; space aliens from Alpha Centauri; time travelers; or some utterly unknown intelligent being. Of course, some of these possibilities may seem more plausible than others based on information from fields other than science. Nonetheless, as regards the identity of the designer, modern ID theory happily echoes Isaac Newton's phrase >hypothesis non fingo.[12]

    "Although intelligent design fits comfortably with a belief in God, it doesn't require it, because the scientific theory doesn't tell you who the designer is. While most people - including myself - will think the designer is God, some people might think that the designer was a space alien or something odd like that."[13]

    "One of the worries about intelligent design is that it will jettison much of what is accepted in science, and that an “ID-based curriculum” will look very different from current science curricula. Although intelligent design has radical implications for science, I submit that it does not have nearly as radical implications for science education. First off, intelligent design is not a form of anti-evolutionism. Intelligent design does not claim that living things came together suddenly in their present form through the efforts of a supernatural creator. Intelligent design is not and never will be a doctrine of creation."[14]

    "The conclusion that something was designed can be made quite independently of knowledge of the designer. As a matter of procedure, the design must first be apprehended before there can be any further question about the designer. The inference to design can be held with all the firmness that is possible in this world, without knowing anything about the designer."[15]

    "The most obvious difference is that scientific creationism has prior religious commitments whereas intelligent design does not. ... Intelligent design ... has no prior religious commitments and interprets the data of science on generally accepted scientific principles. In particular, intelligent design does not depend on the biblical account of creation."[16]

    "Intelligent design begins with data that scientists observe in the laboratory and nature, identifies in them patterns known to signal intelligent causes and thereby ascertains whether a phenomenon was designed. For design theorists, the conclusion of design constitutes an inference from data, not a deduction from religious authority."[17]

    "ID is not an interventionist theory. Its only commitment is that the design in the world be empirically detectable. All the design could therefore have emerged through a cosmic evolutionary process that started with the Big Bang. What's more, the designer need not be a deity. It could be an extraterrestrial or a telic process inherent in the universe. ID has no doctrine of creation. Scott and Branch at best could argue that many of the ID proponents are religious believers in a deity, but that has no bearing on the content of the theory. As for being “vague” about what happened and when, that is utterly misleading. ID claims that many naturalistic evolutionary scenarios (like the origin of life) are unsupported by evidence and that we simply do not know the answer at this time to what happened. This is not a matter of being vague but rather of not pretending to knowledge that we don't have."[18]
    In each of these quotes, it seems clear that intelligent design proponents are stating that intelligent design theory tells us nothing about the nature of the designer, and cannot determine if the designer was natural or supernatural. If intelligent design is truly a scientific discipline, then this makes perfect sense, for there are limits on what science can tell us, and science is not capable of studying the evidence to tell us if the designer was supernatural or natural.

    Intelligent design theory begins and ends with observations of the natural world. It begins with observations of intelligent agents in the natural world, in order to quantify the sort of information they tend to emplace into their designed objects. It ends with observations as we study natural objects to determine if they contain that information which we know is a tell-tale sign that an intelligent agent played a hand in the origin of that object. True to the scientific method, throughout the entire process of testing for intelligent design, we are making observations of the observable natural world.

    Science, and thus intelligent design theory, can only discover what is found in the observable realm. We cannot access the supernatural. Thus intelligent design proponents make it clear that all their theory can do is tell if a natural object bears the hallmarks of having been designed--it cannot tell you anything about the designer, much less that it was a supernatural deity. If some supernatural agent took action in the natural world, we might be able to detect that action, but not detect whether the actor was supernatural or otherwise.

    Science can indeed tell us if aspects of biology were designed, but it turns out to be silent on the question on the nature of the designer.


    Understanding the Identity of the Designer:
    The scientific theory of intelligent design cannot identify the designer, but only detects the past occurrence of intelligent design in the natural world. Intelligent design theory cannot name the designer because it works off the assumption that all intelligent agents would generally create certain types of informational patterns when they act. While we can detect that type of information in the natural world to infer intelligent design, finding that type of information does not give us any information about the nature or identity of the designer. All we can infer is that the object we are studying was designed. Consider the following diagram:





    In this diagram, many types of intelligent agents could produce identical objects with high levels of complex and specified information (CSI). Intelligent design theory can only find the object containing high levels of CSI and works backwards to detect if an intelligent was at work. While it can detect that the object was designed, it cannot discriminate what kind of designer designed the object, nor determine any specific properties about the designer, other than that it was an intelligent agent. All intelligent design theory can infer is that the object was designed. Intelligent design, as a scientific theory cannot identify the identity of the designer.

    Not identifying the designer is not a cop-out nor does it stem from an unwillingness to be honest about motivations. It results solely from the pure empirical limitations of scientific investigation. As William Dembski notes: "[The] only commitment [of intelligent design theory] is that the design in the world be empirically detectable…This is not a matter of being vague but rather of not pretending to [have] knowledge that we don't have." (See footnote [18]) The scientific method and empirical data are presently incapable of helping to understand the identity of the designer. Thus, the scientific theory of intelligent design simply cannot identity the designer because it is not a question which can be addressed through the methods of science. At this point, this question of the identity of the designer cannot be answered thruogh intelligent design theory.

    The fact that the identity of the designer is a religious question does not negate the purely scientific methods through which we can infer merely that an object was indeed designed. Indeed, when we find the type of information we know tends to be produced by intelligent agents, we have a valid scientific rationale for inferring intelligent design.

    Thus, intelligent design proponents themselves readily admit that they may believe the designer is God. However, this belief does not derive from intelligent design theory.  To call intelligent design an appeal to a “supernatural creator” is to inaccurately describe intellignt design theory.

    "In more than 20 states, proposals supporting intelligent design are being considered, most notably by the Kansas State Board of Education, which may decide this month whether to include intelligent design lessons in its new science curriculum standards and encourage school teachersy to more aggressively challenge the precepts of Darwinism." (Scott LaFee, Union Tribune Staff Science Reporter)


    Response: This is another inaccurate statement because the Kansas State Board of Education is not considering introducing intelligent design into the curriculum.  All they are considering is whether criticism of Neo-Darwinism should be taught.   They are not considering teaching another alternative explanation like intelligent design.

    Documentation on what is actually being considered by the Kansas State Board of Education can be found at http://www.evolutionnews.org/index.php?p=465&more=1&c=1&tb=1&pb=1 where an article by Seattle Pacific University political science professor John West explains the actual nature of what is being considered by the Kansas State Board of Education.  In contrast to what your article contained, the actual draft being considered by the Kansas Science standards contains the following statement: “the Science Curriculum Standards do not include the theory of Intelligent Design. While the testimony presented at the science hearings included both advocates and critics of the theory of Intelligent Design, we do not include it in these curriculum standards. The Board does not take a position on this topic.” For more direct documentation demonstrating why the Kansas State Board of Education ("Board") is not currently considering mandating intelligent design in the curriculum, also visit the Board's latest working version of the science standards here, which contains the above-quoted disclaimer that the Board is not considering mandating intelligent design in the curriculum.

    Response to Comments by Phil Unitt:

    "'Intelligent design' is science only if it's a story that can be tested by observation and experimentation. Is there any observation we can make or experiment we can do whose results would be one way if 'intelligent design' is true, another way if it is false?"  (Phil Unitt, ornithologist, San Diego Natural History Museum))


    Response: Dr. Unitt is correct to state that scientific ideas can be tested by “observation and experimentation” and subject to being proven false. At this point, Dr. Unitt’s lack of familiarity with intelligent design theory, or the wrings of intelligent design proponents becomes eminently clear, as intelligent design proponents have devised many ways of testing their ideas.

    Intelligent design is based upon the methods of science, and not upon faith. Leading intelligent design theorist William Dembski writes:  "Intelligent design begins with data that scientists observe in the laboratory and nature, identifies in them patterns known to signal intelligent causes and thereby ascertains whether a phenomenon was designed. For design theorists, the conclusion of design constitutes an inference from data, not a deduction from religious authority."[19]

    "Natural causes are too stupid to keep pace with intelligent causes. Intelligent design theory provides a rigorous scientific demonstration of this long-standing intuition. Let me stress, the complexity-specification criterion is not a principle that comes to us demanding our unexamined acceptance--it is not an article of faith. Rather it is the outcome of a careful and sustained argument about the precise interrelationships between necessity, chance and design."[20]
    Intelligent design thus uses the scientific method to detect design. The following is a description of the scientific method (which correlates with Dr. Unitt’s description of the scientific method):



    Detecting design using the scientific method: i. Observation:
    The ways that intelligent agents act can be observed in the natural world and described. When intelligent agents act, it is observed that they produce high levels of "complex-specified information" (CSI). CSI is basically a scenario which is unlikely to happen (making it complex), and conforms to a pattern (making it specified). Language and machines are good examples of things with much CSI. From our understanding of the world, high levels of CSI are always the product of intelligent design.

    ii. Hypothesis:
    If an object in the natural world was designed, then we should be able to examine that object and find the same high levels of CSI in the natural world as we find in human-designed objects.

    iii. Experiment:
    We can examine biological structures to test if high CSI exists. When we look at natural objects in biology, we find many machine-like structures which are specified, because they have a particular arrangement of parts which is necessary for them to function, and complex because they have an unlikely arrangement of many interacting parts. These biological machines are "irreducibly complex," for any change in the nature or arrangement of these parts would destroy their function. Irreducibly complex structures cannot be built up through an alternative theory, such as Darwinian evolution, because Darwinian evolution requires that a biological structure be functional along every small-step of its evolution. "Reverse engineering" of these structures shows that they cease to function if changed even slightly.

    iv. Conclusion:
    Because they exhibit high levels of CSI, a quality known to be produced only by intelligent design, and because there is no other known mechanism to explain the origin of these "irreducibly complex" biological structures, we conclude that they were intelligently designed.
    The writings of ID proponents show that intelligent design theory uses observations and tests to validate its claims. Incidentally, Dr. Unitt did not mention Dembski’s work, CSI, irreducible complexity, or the many biological-data-based arguments made by intelligent design proponents about intelligent design.

    Also, regarding testability of intelligent design, a number of testable predictions made by intelligent design proponents are outlined in detail in Tables 1-3 above.  

    “In any case, even if God – or someone claiming to be God – were to emerge in a puff of smoke on the floor of the Senate and claim to have created the universe, that story would not be science unless there were some independent means of testing that claim through observation and experimentation.” (Phil Unitt, ornithologist, San Diego Natural History Museum)


    Response: Of course Dr. Unitt’s statements here are completely correct. The question is, what relevance does it have to intelligent design theory?  Such criticisms have no application to intelligent design theory for the following reasons:

    1)     Intelligent design theory is not claiming that “God” or any other designer in particular created the universe

    2)     Intelligent design is not basing its claims off of any religious authority or scriptural test.  This is explained by William Dembski: "Intelligent design begins with data that scientists observe in the laboratory and nature, identifies in them patterns known to signal intelligent causes and thereby ascertains whether a phenomenon was designed. For design theorists, the conclusion of design constitutes an inference from data, not a deduction from religious authority."[21] Thus, intelligent design is very simple. Here is a basic schematic of how it works: Intelligent design theory simply observes intelligent agents in nature and observes that when they act, they tend to design objects with property X. If we can then go out into nature and test to see if objects contain property X, we can construct a testable, repeatable, independent mode of detecting design. In fact, this type of reasoning is already employed with the Search for Extra-Terrestrial Intelligence (SETI) Project.  Popularized in the movie Contact based upon the novel by Carl Sagan, SETI employs arrays of radiotelescopes to scan the skies for electromagnetic signals with an extraterrestrial intelligent origin.  The challenge posed to SETI researchers is to discriminate between radiosignals actually sent by intelligent agents, and those of a purely natural origin.   This is ID reasoning in action: SETI must detect designed radiosignals amongst naturally occurring interstellar signals.

    ID uses similar logic to detect design in biology.   The theory is essentially a competing explanation for the origin of biological information.   As Richard Dawkins observes, every cell “contains a digitally coded database larger, in information content, than all 30 volumes of the Encyclopaedia Britannica put together.”[22] By observing that intelligent agents tend to produce tremendous amounts of encoded information, ID theorists look at the cell and find places where design is the best explanation.

    Response to Comments by Christopher Wills:

    “Intelligent design is not science, because it only goes partway through this process and leaves out the most important part. Advocates of intelligent design have observed the world, and have proposed the hypothesis that some vast intelligence must have created it because the world (or at least some portion of it) is too complicated to have arisen through natural processes.

    This is their hypothesis, and it is in principle testable. For example, one could look for messages or other evidence for the existence of a vast intelligence (see Carl Sagan's novel "Contact" for a fictional example).

    [...]

    But the intelligent designers have proposed no such experiments. Their hypothesis is therefore not subject to modification, much less eventual abandonment. As a consequence, intelligent design and its parent belief, creationism, are not science.”  (Christopher Wills, professor of biology, UCSD)


    Response: Firstly, a semantic correction. Dr. Wills refers to intelligent design proponents as "intelligent designers." While intelligent design proponents are humans, and thus are "intelligent designers" the correct way to refer to a proponent of an intelligent design is not to call them an "intelligent designer." In intelligent design theory, "intelligent designers" are those who do the designing of the objects being studied. To refer to scientists who are accepting of intelligent design theory, it might be clearer for him to use terminology such as "intelligent design proponents" or even acceptable terms of endearment like "IDists."

    Dr. Wills makes an interesting concession here because he concedes that intelligent design is “in principle” falsifiable.  He writes “it is in principle testable.”  Thus, Wills contradicts Phil Unitt’s claim that intelligent design is not even in principle subject to testability.  In fact, Wills even mentions the SETI Project as an example of intelligent design reasoning in-action. Thus, Wills makes very important concessions which go towards intelligent design being possible to be a legitimate scientific hypothesis. 

    However, for Wills, it has not been practically put to the test.  Thus, for Wills, intelligent design is not science because it isn’t testable, it isn’t science because it simply hasn’t been tested.  Thus, Wills makes the following allegations: “the intelligent designers have proposed no such experiments. Their hypothesis is therefore not subject to modification, much less eventual abandonment.”

    Again, this demonstrates a complete lack of familiarity with the primary writings and literature of intelligent design proponents.   Intelligent design has been tested.   Indeed, in a recent article, “The origin of biological information and the higher taxonomic categories,"[23] by Stephen C. Meyer proposes that intelligent design might be detected if we found one can study the paleontological record to test if the phyla were designed in the Cambrian explosion.  Indeed, others have done computer calculation studies to test the degree to which irreducible complexity exists in protein-protein bonds, which may have a large bearing on whether or not these structures were designed.[24]   This paper, by a leading design theorist Michael Behe, gives indirect support to the notion that protein-protein interactions exhibit intelligent design. 

    Clearly ID proponents have indeed tested their ideas against the data. This means that contrary to Dr. Wills’ allegations, intelligent design passes his second criteria for being science: that it has been subjected to actual tests! 

    “Or, in the case of evolution, one could search for sudden discontinuities in the history of life, in which a new structure or function has arisen without any previous history and no relationship to structures or functions in other related organisms. (Such new structures have not yet been found, by the way.)”  (Christopher Wills, professor of biology, UCSD)


    Response: Dr. Wills is correct to claim that evolution is testable.  However, his claim that there are no “sudden discontinuities in the history of life” or that there are no “new structure or function [that] has arisen without any previous history and no relationship to structures or functions in other related organisms” are pure bluffs.  The fossil record tells a tale where there are many new structures which appear in a “discontinuous” manner which betrays a simple evolutionary explanation. Consider the following statements from prominent biologists who were not bluffing about the nature of the fossil record: “No wonder paleontologists shied away from evolution for so long. It never seemed to happen. Assiduous collecting up cliff faces yields … a rate too slow to account for all the prodigious change that has occurred in evolutionary history. When we do see the introduction of evolutionary novelty, it usually shows up with a bang, and often with no firm evidence that the fossils did not evolve elsewhere!”[25] In 1997, vertebrate paleontologist Robert Carroll wrote: "Fossils would be expected to show a continuous progression of slightly different forms linking all species and all major groups with one another in a nearly unbroken spectrum. In fact, most well-preserved fossils are as readily classified in a relatively small number of major groups…"[26] In 1999, reviewing a book in Nature, Oxford zoologist Mark Pagel stated: “Palaeobiologists flocked to these scientific visions of a world in a constant state of flux and admixture. But instead of finding the slow, smooth and progressive changes Lyell and Darwin had expected, they saw in the fossil records rapid bursts of change, new species appearing seemingly out of nowhere and then remaining unchanged for millions of years-patterns hauntingly reminiscent of creation.”[27] Finally, in 2001, evolutionary biologist Ernst Mayr wrote: "Wherever we look at the living biota … discontinuities are overwhelmingly frequent…The discontinuities are even more striking in the fossil record. New species usually appear in the fossil record suddenly, not connected with their ancestors by a series of intermediates."[28] These quotes are not listed to imply that there are never any fossils in the fossil record which could be called transitionalish, or which might be interpreted as transitional forms. However, these are here to rebut Dr. Wills bold bluff that there are no "sudden discontinuities in the history of life." Given that it appears Dr. Wills boldly proclaimed the presence of "sudden discontinuities in the history of life" as a test of evolution, it would seem that evolution has failed this test upon many occasions in the fossil record.

    While many evolutionary biologists have attempted to invoke “punctuated equilibrium” as an explanation for the abrupt and discontinuous appearance of biological novelty in the fossil record, consider this analysis of the implausibility of such an explanation by biologist Michael Denton: "[M]ajor discontinuities simply could not, unless we are to believe in miracles, have been crossed in geologically short periods of time through one or two transitional species occupying restricted geographical areas. Surely such transitions must have involved long lineages including many collateral lines of hundreds or probably thousands of transitional species.[29] Specifically, regarding one major event in the history of life, it appears that it occurs in a highly discontinuous manner lacking transitional forms: "It follows that 6-10 million year in the evolutionary time scale is but a blink of an eye. The Cambrian explosion denoting the almost simultaneous emergence of nearly all the extant phyla of the Kingdom Animalia within the time span of 6-10 million years can’t possibly be explained by mutational divergence of individual gene functions."[30] As one biology textbook writes: "Most of the animal phyla that are represented in the fossil record first appear, ‘fully formed’ and identifiable as to their phylum in the Cambrian some 550 million years ago...The fossil record is therefore of no help with respect to the origin and early diversification of the various animal phyla..."[31] In the words of the famous evolutionary biologist Richard Dawkins, the Cambrian Explosion  fossils are “Already in a very advanced state of evolution the very first time they appear.  It is though they were just planted there, without any evolutionary history.”[32]

    Thus, according to this evidence, there clearly are “sudden discontinuities in the history of life, in which a new structure or function has arisen without any previous history and no relationship to structures or functions in other related organisms.”  By his own standards, evolution seems to fail the test put forth by Christopher Wills with respect to the origin of the major body plans of animals as they appear in the Cambrian Explosion.

    Response to Comments by Exequiel Ezcurra:

    “(Intelligent design) postulates the existence of a hypothetical and abstract entity, lacking any physical concrete presence, unobservable and impossible to experiment with in order to explain biological structures and processes whose origin can be perfectly explained by the simple rules of natural selection.” (Exequiel Ezcurra, director of scientific research, San Diego Natural History Museum)

    Response: This is an odd characterization of intelligent design theory, because most intelligent design theorists do not cast the theory in terms of its predicting an “entity” and don’t even talk that much about the nature or identity of the designer.  As William Dembski writes: "Intelligent design is modest in what it attributes to the designing intelligence responsible for the specified complexity in nature. For instance, design theorists recognize that the nature, moral character and purposes of this intelligence lie beyond the competence of science and must be left to religion and philosophy."[8] Rather than studying the designing agents, intelligent design theorists focus on studying the observable natural systems themselves to see if they bear the hallmarks of systems which were designed. Dr. Ezcurra’s characterization of intelligent design theory thus stands in stark contrast to the descriptions put forth by actual proponents of intelligent design, who write as follows: “The fundamental claim of intelligent design is straightforward and easily intelligible: namely, there exist natural systems that cannot be adequately explained in terms of undirected natural causes and that exhibit features which in any other circumstances we would attribute to intelligence.”[33] Thus, intelligent design is based upon positive predictions based upon the types of “features which in any other circumstance we would attribute to intelligence.”   It does not postulate any “entities” but rather studies systems to see if those systems “exhibit clear hallmarks of [having been designed by] intelligence.”[34]

    Additionally, if there were any need for evidence of a designer, intelligent design theory itself provides it.  As noted, intelligent design theory studies how intelligent agents operate to figure out what kind of properties are typically found in objects they design. When those same types of properties are found in objects in nature, we have a rational argument for inferring that some intelligence designed those objects.

    “It is based on the acceptance of the existence of a completely unnecessary conjecture – that of a supernatural "intelligent designer" – and violates one of the most basic principles of scientific philosophy, the principle of parsimony, which states that natural effects should be explained through natural causes and that unnecessary hypotheses should be discarded when trying to understand the way the natural world works.”  (Exequiel Ezcurra, director of scientific research, San Diego Natural History Museum)


    Response: Here, Dr. Ezcurra again mischaracterizes intelligent design as an appeal to the “supernatural.’   Dr. Ezcurra is correct to state that science cannot study the supernatural. However, if an object bears properties which seem to be like those which we find in objects we observe are created by intelligent agents, then the most parsimonious explanation is that such an object was designed. Thus, as Stephen C. Meyer writes: “Experience teaches that information-rich systems … invariably result from intelligent causes, not naturalistic ones. … Finding the best explanation, however, requires invoking causes that have the power to produce the effect in question. When it comes to information, we know of only one such cause. For this reason, the biology of the information age now requires a new science of design.” [35]

    “Agents can arrange matter with distant goals in mind. In their use of language, they routinely ‘find’ highly isolated and improbable functional sequences amid vast spaces of combinatorial possibilities.”[36]

    "Indeed, in all cases where we know the causal origin of 'high information content,' experience has shown that intelligent design played a causal role."[37]
    If Meyer’s observations are correct, then intelligent design is the most parsimonious explanation for instances of “language” and code, and complexity, and isolated sequences with highly specified information content, such our genetic code.   This inference is strengthened when it is observed that current undirected hypotheses of biological origins, such as Neo-Darwinism, are incapable of explaining the origin of such biological complexity.

    Response to Comments by Evan Snyder:

    “If proponents of intelligent design (ID) wish their hypothesis to be treated as a science, then they must be prepared to generate experiments that will prove ID incorrect and teach their students how to disprove ID. If an "intelligent designer" is equated with "God," then, if they are true scientists, they must now spend their time trying to disprove the existence of God. I am not sure if the proponents of ID are prepared to go down that route – training a classroom of students to design experiments that rule out the existence of God.”  (Dr. Evan Snyder, neurologist and director of the Stem Cells and Regeneration Program at The Burnham Institute)


    Response: Again, Dr. Snyder makes the mistake that intelligent design proponents are arguing for the existence of “God.” As noted previously, intelligent design theory does not identify the existence of the designer.  

    Additionally, Dr. Snyder implies that intelligent design theorists are afraid of falsifying their hypotheses because it will damage their faith.  Rather, there are clear-cut examples of Darwinists who see evidence for intelligent design but reject it for their own anti-theological reasons. Consider this statement by Richard Dawkins regarding the aforementioned explanation for the Cambrian explosion: “Both schools of thought agree that the only alternative explanation of the sudden appearance of so many complex animal types in the Cambrian era is divine creation, and both would reject this alternative.”[38] While intelligent design is not an argument for “divine creation,” the same reaction can be seen from Darwinists regarding intelligent design. Intelligent design theory threatens to overturn Darwinism, which is what Dawkins notes “made it possible to be an intellectually fulfilled atheist.”[39] While many scientists indeed are theists, this gives some scientists strong philosophical reasons for opposing intelligent design theory.   William Dembski notes that it is a fear of losing support for Darwinism which causes Darwinists like Dr. Snyder to improperly mischaracterize intelligent design as simply an appeal to God: “Why are critics of intelligent design so quick to conflate it with theology[?] … I submit that the preoccupation by critics of intelligent design with theology results not from intelligent design being inherently theological. Instead, it results from critics having built their own theology (or anti-theology, as the case may be) on a foundation of Darwinism.  Intelligent design challenges that foundation, so critics reflexively assume that intelligent design must be inherently theological or have a theological agenda.  Freud, if it were not for his own virulent Darwinism, would have instantly seen this as a projection.  Critics of intelligent design resort to a classic defense mechanism: they project onto intelligent design the very thing that intelligent design unmasks in their own views, namely, that Darwinism, especially as it has been taken up by today’s intellectual elite, has itself become a project in theology.”[40]
    “Yet, if they wish to add ID to the scientific curriculum, that is precisely what they must be prepared to do. Those experiments would then take their place with all the other experiments designed to rule out any hypothesis, in other words, to show that the null hypothesis (the idea that events and phenomena are dictated solely by chance) cannot be rejected.”  (Dr. Evan Snyder, neurologist and director of the Stem Cells and Regeneration Program at The Burnham Institute)


    Response: Dr. Snyder is of course correct that ID needs to be subjected to tested and attempts for falsification.   ID proponents do not fear this, and as noted above, ID proponents have tested their ideas against the data.   He is incorrect to assume they have not tested their claims.  Below is another summary of how ID matches up when tested against the data:

    Table 4.  Testing Intelligent Design:

    Line of Evidence

    Data (Experiment)

    Prediction of Design Met? (Conclusion)

    (1) Biochemical complexity / Laws of the Universe.

    High information content machine-like irreducibly complex structures are commonly found. The bacterial flagellum is a prime example. Specified complexity found in the laws of the universe may be another.

    Yes.

    (2) Fossil Record

    Biological complexity (i.e. new species) tend to appear in the fossil record suddenly and without any similar precursors. The Cambrian explosion is a prime example.

    Yes.

    (3) Distribution of Molecular and Morphological Characteristics

    Similar parts found in different organisms. Many genes and functional parts not distributed in a manner predicted by ancestry, and are often found in clearly unrelated organisms. The "root" of the tree of life is a prime example.

    Yes.

    (4) DNA Biochemical and Biological Functionality

    Increased knowledge of genetics has created a strong trend towards functionality for "junk-DNA." Examples include recently discovered functionality in some pseudogenes, microRNAs, introns, LINE and ALU elements. Examples of DNA of unknown function persist, but discovery of function may be expected (or lack of current function still explainable under a design paradigm).

    Yes.



    The data did not have to turn out like this, but the data do seem to be confirming intelligent design.

    Response to Comments by Jeffrey Bada:

    “There is optimism that science will eventually provide an understanding of at least the basic processes [of the origin of life]. Intelligent design claims that the processes involved are scientifically unknowable and thus must be explained by a supernatural or extraterrestrial creator.

    This is akin to the widely held 19th century theory of panspermia that life on Earth began from a spore or seed from outer space. Scientific research subsequently demonstrated that panaspermia was not a testable and verifiable scientific theory and the same applies to intelligent design today.” (Jeffrey Bada, marine chemist, Scripps Institution of Oceanography)


    Response: Dr. Bada should be commended for recognizing that intelligent design is not an argument specifically for a supernatural creator. However, Dr. Bada does indeed misconstrue intelligent design.  Bada claims that intelligent design claims that because the processes involved in the origin of life are “scientifically unknowable” that therefore intelligent design is the best explanation. In contrast, intelligent design makes no such argument from ignorance, and I am aware of no intelligent design proponent who has ever made such an argument. 

    As noted previously, intelligent design proponents observe that intelligent agents tend to produce specific types of coded information. When such high levels of encoded information are found in the cell, perhaps intelligent design is the best explanation.  Consider this argument from Stephen C. Meyer which rebuts Bada’s “argument from ignorance” claim with respect to the powerful argument ID makes to explain the origin of life: "Design theorists infer a past intelligent cause based upon present knowledge of cause and effect relationships. Inferences to design thus employ the standard uniformitarian method of reasoning used in all historical sciences, many of which routinely detect intelligent causes. We would not say, for example, that an archeologist had committed a "scribe of the gaps" fallacy simply because he inferred that an intelligent agent had produced an ancient hieroglyphic inscription. Instead, we recognize that the archeologist has made an inference based upon the presence of a feature (namely, "high information content") that invariably implicates an intelligent cause, not (solely) upon the absence of evidence for a suitably efficacious natural cause.

    Second … the "DNA to Design" argument does not depend upon an analogy between the features of human artifacts and living systems, still less upon a weak or illicit one. If, as Bill Gates has said, "DNA is similar to a software program" but more complex, it makes sense, on analogical grounds, to consider inferring that it too had an intelligent source.

    […]

    The design argument from the information in DNA does not depend upon such analogical reasoning since it does not depend upon claims of similarity. As noted above, the coding regions of DNA have the very same property of "specified complexity" or "information content" that computer codes and linguistic texts do. Though DNA does not possess all the properties of natural languages or "semantic information"--i.e., information that is subjectively "meaningful" to human agents--it does have precisely those properties that jointly implicate an antecedent intelligence.”[41]

    Dr. Bada’s statements also stand in contrast to Christopher Wills’ comments as Bada claims that intelligent design is untestable. Wills, however, who is familiar with the SETI project, recognizes that the claim that an object was designed is indeed testable.  Intelligent design proponents regularly cite SETI as a one of many examples of ID-reasoning being applied by scientists.

    Finally, Bada expresses “optimism” that the origin of life may still be explained via undirected naturalistic hypotheses. While intelligent design does not necessarily rise on the failure of such naturalistic hypotheses, it seems clear that many scientists are stumped when it comes to explaining the origin of life:

    If I were a creationist, I would cease attacking the theory of evolution ... and focus instead on the origin of life. This is by far the weakest strut of the chassis of modern biology.”[42]

    More than 30 years of experimentation on the origin of life in the fields of chemical and molecular evolution have led to a better perception of the immensity of the problem of the origin of life on Earth rather than to its solution. At present all discussions on principal theories and experiments in the field either end in stalemate or in a confession of ignorance. New lines of thinking and experimentation must be tried."[43]
    Surely some scientists such as Dr. Bada may be holding out in faith that a purely naturalistic explanation will one day be found for the origin of life. However, the high level of irreducible complexity found in even the "simplest" life-form on earth makes intelligent design an exceedingly compelling explanation.

    Response to Comments by Moselio Schaechter:

    “How can anyone say that something is irreducibly complex, thus evolution impossible? How do they know? Could it not just escape our present state of understanding? Weren't phenomena such as how inheritance takes place thought to be unfathomable not long ago?”  (Moselio Schaechter, adjunct professor of biology, SDSU))


    Response: Here Dr. Schaechtler commits the “Darwin-of-the-gaps” fallacy by assuming that all current failures of evolution will one day be solved.  In reality, it is very easy for one to question the evolvability of a structure based upon irreducible complexity. In fact, the very first person to pose such a challenge to Darwin’s theory was Darwin himself!  Darwin wrote: "If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications, my theory would absolutely break down.”[44]

    Michael Behe explains that Darwin’s test applies to biological features discovered in modern biology in that they require many parts in order to function, and if one part is removed, the feature stops functioning.  This makes us severely question if these structures are evolvable.   The burden is upon Darwinist to come up with an account which demonstrates that a feature can arise by “numerous, successive, slight modifications” for they are the ones making that claim. As Michael Behe writes:

    “In Darwin's Black Box (page 176) I implied that many small details would be necessary for a real Darwinian explanation) … that’s simply what’s necessary to actually explain the appearance of a complex, functional system in a Darwinian fashion, to show that it could indeed happen as Darwinists claim. Proteins change single mutation by single mutation, amino acid by amino acid, so that’s the level of explanation that is needed. What part of “numerous, successive, slight” is so hard to understand?”[45] To answer Dr. Schaetler’s question, it is very simple to test for irreducible complexity.  All one must do is look at a system and then perform reverse engineering, through knockout experiments, computer simulations, or theoretical calculations to imagine if it, or its subsystems, could perform some kind of a function as they are built up, in a small step-by-step manner, over numerous small successive slight changes of an evolutionary pathway.  If it can be done, then the feature is not irreducibly complex.

    “These days, we are whittling away quite blissfully at the complexity of biology. For example, we have learned that "horizontal" transmission of whole packets of genes between species happened before and happens now. This means that evolution doesn't depend just on the accumulation of single mutations but that organisms can change wholesale. An example is the plague bacillus, which appears to have arisen by such a mechanism some 100,000 years ago. (Moselio Schaechter, adjunct professor of biology, SDSU)


    Response: Biologists surely are learning more about the complexity of biology!   But as they learn more, they are not coming up with explanations for the origin of many forms of irreducibly complex biological features such as the flagellum.   Dr. Schaechter talks about a plague which supposedly arose by evolution about 100,000 years ago.   While there is no doubt that Dr. Schaechter has evidence that such a plague arose long ago, he provides no evidence for how the genes which were horizontally transmitted arose in the first place.   Dr. Schaechter’s evidence probably comes simply from comparing proteins in one bacteria to proteins of another.   This may imply common descent, but it does not imply that a Neo-Darwinian mechanism was at work. What is necessary is a detailed account of what genes were transmitted such that structures remain functional along each step of the evolution. 

    The genes which form the bacterial flagellum are highly tailored to create a complex biological machine. Over 40 parts are required to create an outboard rotary engine on a bacterium.  Michael Behe argues that such a structure is irreducibly complex.  What are the odds that such genes suddenly appeared in one bacterium to assemble such a complex machine?  The odds are so low that it should not happen in the history of the universe, and biologists have still not come up with an evolutionary explanation for the origin of such biological complexity. 

    Response to Comments by Mark Tuszynski:

    “A very simple experiment performed decades ago showed that when a mixture of simple chemicals was placed in a closed chamber and energy was added, the building blocks of life (amino acids) spontaneously formed. The conditions of this experiment mimicked the state of the primordial planet billions of years ago.

    Thus, the building blocks of life can easily be made through natural processes, and have been available for hundreds of millions to billions of years. It is not hard to conceive that, over this extended time, chance events and selective environmental pressure would create the remarkable and beautifully diverse forms of life we have today.”  (Dr. Mark Tuszynski, neurologist/neuroscientist, UCSD)


    Response: Dr. Tuszynski is correct that in 1953, Stanley Miller showed that most of the amino acids present in life could be created through a simple experiment. However, he is incorrect to state that “[t]he conditions of this experiment mimicked the state of the primordial planet billions of years ago.”   In contrast, this experiment has fallen under severe criticism because of the very fact that it did not mimic the actual conditions on the early earth. Unfortunately, it appears that Dr. Tuszynyski is unaware of the current state of origin of life research. 

    Origin-of-life researchers often assume there was a purely natural cause, though often there is no external scientific evidence for that cause, only philosophical assumptions. This fact is well-illustrated by admissions made by famous origin of life (OOL) researcher Stanley Miller about why he used certain gasses in experiments producing the building blocks of life: "It is assumed that amino acids more complex than glycene were required for the origin of life, then these results indicate a need for CH4 (methane) in the atmosphere"[46]

    &

    "We believe that there must have been a period when the earth's atmosphere was reducing, because the synthesis of compounds of biological interest takes place only under reducing conditions." [47]
    Miller chose to use methane (CH4) and ammonia (NH3), not because they were actually thought to be a part of the early atmosphere but rather because they are essential to the production of the proper amino acids and gave the desired results. As noted, Stanley Miller admits that he assumed that the atmosphere had methane and ammonia—he did not test that hypothesis. They just wanted to see if they could produce the right molecules using various contrived mixtures of gasses. Given the simple molecules they were trying to synthesize, these experiments are little more than simple exercises in organic chemistry and literally say nothing about the chemical origin of life. Though at the time, Miller’s experiment was promoted as supporting the hypothesis that life arose out of a primordial soup, subsequent research has enumerated problems with the hypothesis:
    1. Miller’s experiment requires a reducing methane and ammonia atmosphere[48]  however geochemical evidence says the atmosphere was hydrogen, water, and carbon dioxide (non-reducing) and did not have methane or ammonia.[49] The only amino acid produced in a such an atmosphere is glycine (and only when the hydrogen content is unreasonably high), and could not form the necessary building blocks of life.[50]   Furthermore, numerous authors have demonstrated the impossibility of forming amino acids in the presence of an oxygenic atmosphere.[51]
    2. These "pre-biotic chemicals" are formed only in very small amounts and degrade quickly into a tar-like substance.[52] Not only would UV radiation destroy any molecules that were made, but their own short lifespans would also greatly limit their numbers. For example, at 100ºC (boiling point of water), the half lives of the nucleic acids Adenine and Guanine are 1 year, uracil is 12 years, and cytozine is 19 days .[53] Such short-lived molecules could never be stockpiled, even if they could be produced naturally at such a low temperature. Either way the rate of degradation is too high to accumulate enough pre-biotic organics to form a soup. But models for earth's formation indicate the earth was hot, meaning degradation would occur even faster! If it the earth had been cold, this would work against the OOL by slowing the chemical reactions that supposedly allowed life to form, increasing the time needed for the OOL.
    3. Catch-22 situation: We all have know ozone in the upper atmosphere protects life from harmful UV radiation. However, ozone is composed of oxygen which is the very gas that Stanley Miller-type experiments avoided, for it prevents the synthesis of organic molecules like the ones obtained from the experiments! Pre-biotic synthesis is in a "damned if you do, damned if you don't" scenario. The chemistry does not work if there is oxygen because the atmosphere would be non-reducing, but if there is no UV-light-blocking oxygen (i.e. ozone - O3) in the atmosphere, the amino acids would be quickly destroyed by extremely high amounts of UV light (which would have been 100 times stronger than today on the early earth).[54] This radiation could destroy methane within a few tens of years[55] and atmospheric ammonia within 30,000 years.[56]
    4. At best the processes would likely create a dilute "thin soup,”[57] destroyed by meteorite impacts every 10 million years.[58]   This severely limits the time available to create pre-biotic chemicals and allow for the OOL.

    Is there any geochemical evidence that the soup ever existed?

    There is no geological evidence left in the rocks that a primordial soup ever existed. If there was ever a soup, the earliest Precambrian rocks should contain high levels of non-biological carbon, for biologically produced carbon contains an excess of "isotopically light" carbon. Ancient sedimentary rocks, however, do not reveal this signature,[59] and thus there is no positive evidence for this soup. If these processes produced a soup, they should have left a significant (1-10 meter thick) layer of tar encircling the earth, but there is no geochemical evidence of such a layer[60] nor any published geochemical evidence of a primordial soup.[61]   Had there been a soup, then the rocks thought to be from that time period ought to contain an "unusually large proportion of carbon or organic chemicals" which they do not.[62]

    So drastic is the evidence against pre-biotic synthesis, that in 1990 the Space Studies Board of the National Research Council recommended to scientists a "reexamination of biological monomer synthesis under primitive Earthlike environments, as revealed in current models of the early Earth."[63]

    Response to Comments by Joshua Fierer:

    “If malaria in a tropical environment was the selective force that led to the prevalence of sickle cell anemia and thalessemia, are we to conclude that the intelligent designer used malaria for that purpose or that the designer overlooked malaria as a problem and there had to be a post-hoc fix to change the structure of red blood cells?” (Dr. Joshua Fierer, professor of medicine and pathology, UCSD)


    Response: Dr. Fierer here does not realize that intelligent design theory is not a moral argument about the “goodness” or “badness” of a design.   After all, many objects of destruction, such as torture chambers, guns, and nuclear weapons are designed.

    There is no incompatibility between having the efficient cause of intelligent design combined with a final cause which is "evil." Something can be morally evil and yet be intelligently designed. For example, medieval torture chambers contain clearly designed tools that were designed to inflict harm, and even death. The same can be said of land mines-they are designed to kill or maim people. Yet, in both cases, the fact that these may be considered evil designs does not detract from the simple claim that they were indeed designed by an intelligent agent. Intelligent design does not say anything about benevolent design. Many features may be initially designed for good purposes, but then later become twisted and used for evil. See Pseudogenes or Psuedoscience for a full discussion of this issue.

    Also, intelligent design does not purport to be an explanation for every aspect of biology, but rather is an explanation for the origin of irreducible complexity in biology when it is appropriate to invoke as the best explanation. For example, Dr. Fierer mentions that genetic variation in hemoglobin in human populations can be attributed to microevolution. Dr. Fierer is probably right. But ID doesn't try to account for trivial microevolutionary variation within a species type changes. Rather, ID focuses on the origin of novel functions, forms, genes, and biochemical pathways in the first place. The genetic variation in human hemoglobin molecules represents a trivial change in biological complexity as it represents just a few amino acid substitutions within the same gene.  It is surely something which could be easily accounted for via natural selection. If intelligent design is not the best explanation for such changes, so be it.   But when we are dealing with the origin of biological novelty, such as entirely new structures (like the bacterial flagellum) or genes (such as the entire globin family of genes), perhaps intelligent design is a better explanation.  Perhaps Neo-Darwinism is the best explanation for the origin of genetic variation among hemoglobin genes within the human population.   This does not challenge intelligent design theory.

    This may thus reflect a misunderstanding about intelligent design theory on the part of Dr. Fierer. Dr. Fierer seems to assume that if intelligent design is invoked, that it therefore must be invoked to explain everything, including the origin of genetic variation among humans with regard to the sequence of hemoglobin protines. However, a cursory look at ID literature indicates that ID proponents have rigorous tests where they do not always infer intelligent design, particularly when law/chance based processes, such as the Darwinian selection-mutation mechanism, are the best explanations.

    Response to Comments by Ajit P. Varki:

    "Years ago, it was claimed that the Earth was the center of the universe. It was also claimed that the Earth was flat. Many scientists were persecuted and even killed because they presented evidence against these faith-based positions.

    Debating intelligent design would be like debating someone who still insists that the Earth is flat, or that it is at the center of the universe, simply because he has not gone up in space in person and viewed the Earth and the solar system in person.

    Since such positions would be based strictly on faith, there is little point in discussing them, let alone giving them undeserved legitimacy. (Dr. Ajit P. Varki, professor of medicine, UCSD)


    Response: It is a terrible thing that people were persecuted for their beliefs in the past.   Unfortunately, this persecution continues today.  People today are rarely killed because of their beliefs (though it does happen in some countries), but a form of intellectual persecution still takes place. Some scientists close their minds and ridicule intelligent design proponents, and evolution is shielded from criticism in schools by people who want to censor scientific evidence from students.  Those who question evolution are ridicule called promoters of “lunacy” or “intellectual drivel.” (See Professor Archibald’s comments below.)  This illiberal and anti-intellectual approach to dealing with important scientific issues promotes the same spirit which drove the Inquisition. Only today, the situation is in the reverse, for it is the materialists who are being the dogmatists and seeking to oust those with anti-materialistic ideas from the public voice. 

    Regarding faith, evolution does have evidence supporting it, but much of it is also faith based.  Richard Lewontin wrote that opposition to intelligent design comes not from evidence, but from a faith based commitment to materialist mindset: “We take the side of science in spite of the patent absurdity of some of its constructs, in spite of its failure to fulfill many of its extravagant promises of health and life, and in spite of the tolerance of the scientific community for unsubstantiated just-so-stories, because we have a prior commitment, a commitment to materialism. It is not that the methods and institutions of science somehow compel us to accept a material explanation of the phenomenal world, but, on the contrary, that we are forced by our priori adherence to material causes to create an apparatus of investigation and a set of concepts that produce material explanations, no matter how counterintuitive, no matter how mystifying to the uninitiated. Moreover, that materialism is an absolute, for we cannot allow a Divine Foot in the door."[64] Or consider this statement by Darwinist philosopher Michael Ruse talking about how evolution is based upon metaphysical assumptions: "And it seems to me very clear that at some very basic level, evolution as a scientific theory makes a commitment to a kind of naturalism, namely, that at some level one is going to exclude miracles and these sorts of things, come what may." (http://www.leaderu.com/orgs/arn/orpages/or151/mr93tran.htm) Thus, today, much of evolutionary science is based upon a faith, or philosophical assumption, that there has been no intervention by an intelligence (what Ruse calls "miracles") throughout the history of life.

    Intelligent design theory seeks to liberate science from its faith-based commitment to methodological naturalism and help science take off its philosophical blinders and consider the empirical, testable claim that life was designed.  As discussed previously, intelligent design is not based upon faith but rather uses the scientific method to make its claims. Dr. Varki does not appear to be familiar with the writings of intelligent design proponents because he assumes that ID proponents make arguments based upon faith or religious authority. Indeed, in his 1998 Cambridge University Press book The Design Inference, William Dembski lays out the theoretical grounds for inferring design and makes no reliance upon faith and uses strictly empirical arguments.   In his 1998 peer reviewed book, “The Design Inference,” (Cambridge University Press) William Dembski   lays out the theory by which we detect design. This book makes no reliance upon religious texts, and is a strictly empirical argument for detecting design. It is not a religious argument.   Thus, intelligent design is not based “strictly on faith” but rather makes no reliance upon faith in making its arguments.  Thus, it is wrong to compare intelligent design to anything which is based "striclty on faith."

    Dr. Varki here compares belief in intelligent design to belief that the earth is the center of the universe. Incidentally, many of the scientists who helped lay the foundations of modern cosmology and physics, such as Kepler and Newton, both were proponents of intelligent design. Kepler, who discovered that planets orbit the sun in elliptical orbits, wrote that "We see how God, like a human architect, approached the founding of the world according to order and rule and measured everything in such a manner." (Johannes Kepler, quoted in: J. H. Tiner, Johannes Kepler-Giant of Faith and Science, Mott Media, Milford, Michigan (USA), 1977, pg. 178.) If one were to be consistent with faulty reasoning such as this, then the scientific method, physics, and the theory of electro-magnetism must also be religious – Sir Francis Bacon, Rene Descartes, Isaac Newton, James Clerk Maxwell, and Michael Faraday are just a few Christian forefathers of modern science whom were often motivated by their belief in God in their scientific conceptions.

    Dr. Varki may choose not to have any discussion or dialogue with intelligent design proponents.    But taking the “ostrich approach” (i.e. stick your head in the sand and hope it goes away) to intelligent design only helps fair-minded people see that such scientists have closed minds and metaphysical blinders on that are keeping them from objectively dealing with the debate over intelligent design. Although we are saddened when evolutionists take this approach, I must admit that the IDEA Center benefits greatly when evolutionists pretend that we aren’t worth talking to, because fair-minded students can see right through this bluff, and it has the effect of exponentially increasing student interest and curiosity in intelligent design.  That’s why IDEA Clubs are appearing on so many prominent university campuses around the United States.   We hope that evolutionists will be interested in dialogue, but for those who aren’t, the world is clearly moving on without them, and student interest continues to grow.

    Incidentally, Dr. Varki's proclamation of boycotting mere dialogue with intelligent design proponents exposes the harsh and philosophically biased political climate found in some scientific circles against intelligent design. In such circles, it is impossible for intelligent design theorists, even when they are credentialed and making credible arguments, to gain a fair hearing before other scientists who have the mentality of Dr. Varki. No wonder ID proponents are rejected when they submit their work to scientific journals--there is an incredibly harsh bias against them in some circles of scientific community!

    Thankfully, some evolutionary biologists are recogizing that the ostrich strategy is working against them. Both a recent article by evolutionary biologist Allen Orr in The New Yorker, and a recent article in Nature recommended that biologists not take the ostrich approach and begin addressing intelligent design. As Orr wrote, ignoring ID stems from a desire to not legitimize intelligent design as a science. But both articles recommend that scientists not ignore intelligent design. Thus, Dr. Varki's attitude towards intelligent design is at odds with what was published on the cover of Nature on April 28, 2005, and also at odds with the attitude of evolutionary biologists such as Allen Orr.

    Finally, Dr. Varki employs the refuted “religious people once advocated the false belief that the earth was flat in contravention to science” myth.   In fact, educated religious people never promoted the notion that the earth was flat.  As documented by UC Santa Barbara history professor Jeffrey Burton Russell “with extraordinary few exceptions no educated person in the history of Western Civilization from the third century B.C. onward believed that the earth was flat.” [65]  Historian Russell concludes his article as follows: "The reason for promoting both the specific lie about the sphericity of the earth and the general lie that religion and science are in natural and eternal conflict in Western society, is to defend Darwinism. The answer is really only slightly more complicated than that bald statement. The flat-earth lie was ammunition against the creationists. The argument was simple and powerful, if not elegant: ‘Look how stupid these Christians are. They are always getting in the way of science and progress. These people who deny evolution today are exactly the same sort of people as those idiots who for at least a thousand years denied that the earth was round. How stupid can you get?’

    But that is not the truth.” [66]
    Response to Comments by J. David Archibald:

    “One should never debate such lunacy. It implies that there is something to debate. It only gives it legitimacy it does not deserve. The cry that teaching intelligent design in the science classroom should be permitted because of intellectual freedom is a red herring. We don't teach alchemy, astrology and witchcraft in the science classroom, because like intelligent design, they are not science. By the same token, all Americans, not just scientists, should speak out and complain when their schools are forced to allow such intellectual drivel into their schools.” (J. David Archibald, professor of biology, SDSU)


    Response: Sadly, Dr. Archibald’s response contains much emotionally-based rhetoric and harsh language, and thus it is difficult to discern the substance behind his comments.  Additionally, Dr. Archibald's response exposes the intense psychological and political opposition faced by intelligent design theorists among scientists who will not even speak to intelligent design proponents about the issue.

    A couple claims can be gleaned from Dr. Archibald's response and responded to. Dr. Archibald compares ID to witchcraft, astrology, and alchemy. It is inappropriate and fallacious to compare intelligent design to alchemy, astrology, or witchcraft.  There is no empirical support for alchemy, witchcraft, or astrology, while there is empirical support for intelligent design. Government-funded scientists, such as the famous Carl Sagan, have already attempted to detect design in radiosignals from outerspace in the SETI project, and thus scientists are already employing the very reasoning Dr. Archibald calls "lunacy" and "drivel." Additionally, design has been taken seriously a legitimate conclusion in physics for many years. Consider these quotes from physicists: "This fine-tuning has two possible explanations. Either the Universe was designed specifically for us by a creator or there is a multitude of universes- a `multiverse'." (Chown, Marcus [Science Editor, New Scientist], "Anything Goes," New Scientist, 6 June 1998, Vol. 158, No. 2137, p.28)

    "Taken together they [lists of design evidences] provide impressive evidence that life as we know it depends very sensitively on the form of the laws of physics, and on some seemingly fortuitous accidents in the actual values that nature has chosen for various particle masses, force strengths, and so on. If we could play God, and select values for these natural quantities at whim by twiddling a set of knobs, we would find that almost all knob settings would render the universe uninhabitable. Some knobs would have to be fine-tuned to enormous precision if life is to flourish in the universe" (Paul Davies, "The Unreasonable Effectiveness of Science", in John Marks Templeton, Evidence of Purpose (New York: The Continuum Publishing Company, 1996), p. 46.)

    "The more I study science, the more I believe in God." (Albert Einstein)

    "The temptation to believe that the Universe is the product of some sort of design, a manifestation of subtle aesthetic and mathematical judgment, is overwhelming. The belief that there is "something behind it all" is one that I personally share with, I suspect, a majority of physicists." (Davies, Paul C.W. [Physicist and Professor of Natural Philosophy, University of Adelaide], "The Christian perspective of a scientist," Review of "The way the world is," by John Polkinghorne, New Scientist, Vol. 98, No. 1354, pp.638-639, 2 June 1983, p.638)

    "If I were a religious man, I would say that everything we have learned about life in the past twenty years shows that we are unique, and therefore, special in God's sight." (University of Virginia astronomers R.T. Rood and J.S. Trefil in their book Are We Alone)

    "Let us recognize these speculations for what they are. They are not physics but, in the strictest sense, metaphysics. There is no purely scientific reason to believe in an ensemble of universes. By construction these other worlds are unknowable by us. A possible explanation of equal intellectual respectability - and to my mind greater economy and elegance would be that this one world is the way it is because it is the creation of the will of a Creator who purposes that it should be so." (Polkinghorne, John C.* [former Professor of Mathematical Physics, Cambridge University, and Anglican priest], "One World: The Interaction of Science and Theology," [1986], SPCK: London, 1987, p.80)

    "The details differ, but the essential elements in the astronomical and biblical accounts of Genesis are the same: the chain of events leading to man commenced suddenly and sharply at a definite moment in time, in a flash of light and energy ... For the scientist who has lived by his faith in the power of reason, the story ends like a bad dream. He has scaled the mountain of ignorance; he is about to conquer the highest peak; as he pulls himself over the final rock, he is greeted by a band of theologians who have been sitting there for centuries." (Robert Jastrow (1978), God and the Astronomers)

    "Contemporary religious thinkers often approach the Argument from Design with a grim determination that their churches shall not again be made to look foolish. Recalling what happened when churchmen opposed first Galileo and then Darwin, they insist that religion must be based not on science but on faith. Philosophy, they announce, has demonstrated that Design Arguments lack all force. I hope to have shown that philosophy has demonstrated no such thing. Our universe, which these religious thinkers believe to be created by God, does look, greatly though this may dismay them, very much as if created by God." (John Leslie, Universes (London: Rougledge, 1989), pg. 40, 64-65, 22)

    "It is hard to resist the impression of something - some influence capable of transcending spacetime and the confinements of relativistic causality - possessing an overview of the entire cosmos at the instant of its creation, and manipulating all the causally disconnected parts to go bang with almost exactly the same vigour at the same time, and yet not so exactly Coordinated as to preclude the small scale, slight irregularities that eventually formed the galaxies, and us." (Paul Davies, the Accidental Universe (Cambridge: Cambridge University Press, 1982), pp. 73)
    Dr. Archibald gives no reasons for why intelligent design belongs in the same class as “alchemy, witchcraft, or astrology” and thus his arguments seem to be mere assertions.   Assertions are worthless unless there are reasons to back them up. His argument insinuates that intelligent design has no empirical value. In contrast, intelligent design provides a casually adequate explanation for the origin of biological complexity. Proponents of alchemy, astrology, and witchcraft do not advocate their ideas to the scientific community, and do not have data supporting their claims. C ontrary to Mr. Archibald’s assertions, intelligent design proponents are making their case to the scientific community.   A recent volume, Debating Design, published by Cambridge University Press, contains a balance of essays from scholars on both sides of this scientific debate.[67]   Since 2004, three papers by ID theorists have appeared in mainstream scientific journals finding data to support ID arguments.[68] Many leading intelligent design proponents are scientists who have Ph.D.’s from legitimate institutions and are often professors at reputable universities.

    Two claims implicated in these papers may be of interest to those wondering if Archibald is accurate to assert that intelligent design is “lunacy”:

    1. Microbiology: Darwin himself proposed a test where “[i]f it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous, successive, slight modifications” then his theory would “absolutely break down.”[69]  Darwin believed he could find “no such case”[70] but the biotechnological revolution has revealed a universe of micro-machines unimagined by Darwin.  One such machine is the bacterial flagellum, an outboard rotary motor for propelling bacteria.  In Darwin’s Black Box, Behe explains the flagellum requires a minimum core of parts to function.[71] It is “irreducibly complex” because if it was less complex, its function would cease.  Irreducible complexity meets Darwin’s test because natural selection cannot preserve features which would have no function over the “numerous, successive, slight modifications” of their evolution.

    2. The Fossil Record: About 530 million years ago, in what paleontologists call the “Cambrian explosion,” nearly every major living animal phylum appears in a geological instant.  Prior to this mass-origin of diversity, there are no direct plausible evolutionary ancestors.  In Dawkins’s words, these fossils appear “just planted there, without any evolutionary history.”[72] ID proponents see this ancestor-less appearance of mass-biological diversity as powerful evidence against Neo-Darwinism. This “explosion” is precisely what we would expect had an intelligent agent rapidly infused large amounts of information into the biosphere. As it turns out, these "explosions" are common in the history of life, and may represent many "design events" in the history of life.

    The burden is upon Dr. Archibald to establish that intelligent design is not the best explanation in these cases if he is to claim that intelligent design is “lunacy” or “drivel.”

    There are principled reasons why intelligent design is nothing like alchemy, witchcraft, or astrology: it all has to do with the data. There is much data supporting intelligent design, and non supporting alchemy, witchcraft, or astrology.  The evidence for design is not coming from faith or superstition, but from reasonable interpretations of data.  ID theorists have a case which cannot just be dismissed as “lunacy.” Dr. Archibald appears uninterested in taking intelligent design seriously.

    However, it is likely that Dr. Archibald's dogmatic opposition to design is stemming from the same philosophical reasons which caused physicist Arthur Eddington to bitterly oppose design in physics (despite the evidence): "Philosophically, the notion of a beginning of the present order of Nature is repugnant . . . I should like to find a genuine loophole." (Sir Arthur Eddington) Dr. Archibald’s "loophole" is to stick his head in the sand and call names. While this tactic is most unfortunate, thankfully, it never has his desired effect. Organizations like ours which attempt to promote intelligent design to students actually benefit greatly when faculty take dogmatic, anti-intellectual, and illiberal anti-ID positions. This is because students tend to have open minds and are willing to learn about and dialogue over ideas, even when they disagree with them. Students are thus turned off by dogmatism, and when they see their professors taking illiberal approaches to important issues, they immediately see through the dogmatism and become intensely interested in the subject of intelligent design (even if they ultimatley disagree with it). Thus, while we are saddened when evolutionists become dogmatic and use emotional rhetoric against intelligent design to stifle dialogue over this issue, we cannot help but recognize that their unfortunate tactic serves to further our goals of increasing student interest and awareness over intelligent design.

    Dr. Archibald also implies that students should not learn about intelligent design.   Should students learn about such alternative scientific ideas?

    Yes. That's what the National Science Standards say. The National Science Education Standards recommend that students engage in “identification of assumptions, use of critical and logical   thinking, and consideration of alternative explanations.”[73]

    Yes.  That's what the US Senate Said: "It is the sense of the Senate that:  (1) good science education   should prepare students to distinguish the data or testable theories  of science from philosophical or religious claims that are made in the   name of science;  (2) where biological evolution is taught, the  curriculum should help students to understand why this subject   generates so much continuing controversy, and should prepare the  students to be informed participants in public discussions regarding   the subject."[74] Yes.  That's what Charles Darwin said: “A fair result can be obtained only by fully stating and balancing the facts and arguments on both sides of each question.”[75] Response to Comments by Tom Demere:

    “I have to admit that it is not that clear to me just what constitutes ID. Since I could find no research papers published in peer-reviewed scientific publications on the subject, I have had to rely on Internet sources. Most ID Web sites mention something about complexity, design and purpose and, using some form of legalese argumentation, conclude that because the natural world is so complex, it must have been created by an intelligent designer.” (Tom Demere, paleontologist, San Diego Natural History Museum)


    Response: Dr. Demere should be commended for admitting that he isn’t familiar with intelligent design theory, as he is the only scientist quoted in this article who was willing to be honest and open about his limited experience with intelligent design. Dr. Demere admits that he has only relied upon internet sources and has not taken the time to read any of the actual primary publications of ID proponents.  He should be commended for acknowledging that he has not read some of the primary and major works of ID proponents such as Darwin’s Black Box, The Design Inference, or Debating Design.   He makes various complaints against the arguments allegedly used on various intelligent design websites. However, absent any references or quotations, his arguments are mere assertions and it is impossible to respond to them directly.  Clearly, however, intelligent design theory does not just say “that because the natural world is so complex, it must have been created by an intelligent designer.”  This sounds more like a caricature of intelligent design, and Dr. Demere is challenged to provide an actual reference to bolster that claim.

    Had Dr. Demere wanted to be sure he understood intelligent design theory before commenting on it publicly, there are many peer-reviewed publications on the subject by its proponents or sympathizers.  As noted at http://www.discovery.org/scripts/viewDB/index.php?command=view&id=2640&program=CSC%20-%20Scientific%20Research%20and%20Scholarship%20-%20Science, the following are scholarly peer-reviewed science-publications have supported intelligent design theory or intelligent design ideas:
  • Jonathan Wells, “Do Centrioles Generate a Polar Ejection Force? Rivista di Biologia/Biology Forum 98 (2005): 37-62.
  • S.C. Meyer, “The Origin of Biological Information and the Higher Taxonomic Categories,” Proceedings of the Biological Society of Washington, 117(2) (2004): 213-239.
  • M.J. Behe and D.W. Snoke, “Simulating Evolution by Gene Duplication of Protein Features That Require Multiple Amino Acid Residues,” Protein Science, 13 (2004): 2651-2664.
  • W.-E. Lönnig & H. Saedler, “Chromosome Rearrangements and Transposable Elements,” Annual Review of Genetics, 36 (2002): 389-410.
  • D.K.Y. Chiu & T.H. Lui, “Integrated Use of Multiple Interdependent Patterns for Biomolecular Sequence Analysis,” International Journal of Fuzzy Systems, 4(3) (September 2002): 766-775.
  • M.J. Denton & J.C. Marshall, “The Laws of Form Revisited,” Nature, 410 (22 March 2001): 417.I.
  • M.J. Denton, J.C. Marshall & M. Legge, (2002) “The Protein Folds as Platonic Forms: New Support for the pre-Darwinian Conception of Evolution by Natural Law,” Journal of Theoretical Biology 219 (2002): 325-342.
  • Sarah A. Mims and Forrest M. Mims III, “Fungal spores are transported long distances in smoke from biomass fires,” Atmospheric Environment 38 (2004): 651-655.
  • Meyer, S. C. "DNA and the origin of life: Information, specification and explanation," Darwinism, Design, and Public Education (DDPE) Pp. 223-285.
  • Behe, M. J., >Design in the details: The origin of biomolecular machines. DDPE Pp. 287-302
  • Nelson, P. & J. Wells, >Homology in biology: Problem for naturalistic science and prospect for intelligent design, DDPE, Pp. 303-322.
  • Meyer, S. C., Ross, M., Nelson, P. & P. Chien, The Cambrian explosion: biology’s big bang, DDPE, Pp. 323-402.
  • Dembski, W.A., Reinstating design within science, DDPE, Pp. 403-418.
  • Scott Minnich and Stephen C. Meyer, “Genetic Analysis of Coordinate Flagellar and Type III Regulatory Circuits,” Proceedings of the Second International Conference on Design & Nature, Rhodes Greece, edited by M.W. Collins and C.A. Brebbia (WIT Press, 2004).
  • W.A. Dembski, The Design Inference: Eliminating Chance through Small Probabilities (Cambridge: Cambridge University Press, 1998).
  • Michael Behe, Darwin’s Black Box: The Biochemical Challenge to Evolution (The Free Press, 1996).
  • Charles B. Thaxton, Walter L. Bradley, Roger L. Olsen, The Mystery of Life’s Origin: Reassessing Current Theories (Philosophical Library, 1984, Lewis & Stanley, 4th ed., 1992).
  • John Angus Campbell and Stephen C. Meyer, Darwinism, Design, & Public Education (Michigan State University Press, 2003)
  • Guillermo Gonzalez and Jay W. Richards, The Privileged Planet: How Our Place in the Cosmos is Designed for Discovery (Regnery Publishing, 2004).
  • William Dembski, No Free Lunch: Why Specified Complexity Cannot be Purchased without Intelligence (Rowman & Littlefield Publishers, 2002).
  • Michael Denton, Evolution: A Theory in Crisis (Adler & Adler, 1985).
  • Dembksi, W.A., The logical underpinnings of intelligent design, Debating Design (Cambridge University Press, 2004), Pp.311-330.
  • Bradley, W. L., Information, Entropy, and the Origin of Life, Debating Design (Cambridge University Press, 2004), Pp. 331-351.
  • Behe, M., Irreducible complexity: obstacle to Darwinian evolution, Debating Design (Cambridge University Press, 2004), Pp. 352-370.
  • Meyer, S. C., The Cambrian information explosion: evidence for intelligent design, Debating Design (Cambridge University Press, 2004), Pg. 371-391.
  • “However, this is like resignedly saying, 'I don't know!' Do we really want our children to just accept that the natural world is too complex to understand, and that the idea of an intelligent designer is sufficient to satisfy our curiosity about such things as the structure and function of DNA, genes, cells and organisms?” Tom Demere, paleontologist, San Diego Name Natural History Museum)


    Response: Intelligent design theory is not just giving up and then appealing to a designer.  Philosophers often use the "correspondence theory of truth" truth to describe the aim of science. According to the "correspondence theory of truth," something is true if it corresponds to an actual fact. Science is supposed to discover things which correspond to facts. If it is true that intelligent design is a cause in the origin and diversification of life on earth, then to not consider intelligent design would be to cause science to not correspond to a fact about the origin and diversification of life on earth. To fail to consider intelligent design as a cause in the origin and diversification of life on earth would be to "stop" science from fulfilling its goal to develop better and more accurate explanations for the causes of natural phenomena.

    Furthermore, intelligent design is not just based upon giving up on naturalistic explanations.  Intelligent design is a casually adequate explanation for the origin of biological complexity: we infer design because we have positive predictions that a designer can create the type of complexity found in the cell. Stephen C. Meyer explains:

    “Experience teaches that information-rich systems … invariably result from intelligent causes, not naturalistic ones. … Finding the best explanation, however, requires invoking causes that have the power to produce the effect in question. When it comes to information, we know of only one such cause. For this reason, the biology of the information age now requires a new science of design.” [76]

    “Agents can arrange matter with distant goals in mind. In their use of language, they routinely ‘find’ highly isolated and improbable functional sequences amid vast spaces of combinatorial possibilities.”[77]

    "Indeed, in all cases where we know the causal origin of 'high information content,' experience has shown that intelligent design played a causal role."[78]
    Thus, intelligent design is not based upon “giving up” but rather is based upon our understanding of how intelligent agents operate, and our recognizing that they may be the best explanation for the origin of various aspects of complexity in nature.  

    Fears over intelligent design often come from the claim that intelligent design would mean "giving up" on evolution, or the end of scientific investigation. These objections may be less visible to the public eye, but are at least equally important in the mind of the scientist. Biologist Rudolph Raff objects to design theory saying, "as the influence of the intelligent designer grows … the relationships between the phenomena and explanations becomes increasingly arbitrary … [until] one reaches a point where all biological features are 'special creations' and other explanations become unnecessary."[79] Here, Raff is not necessarily afraid that we are mixing science with religion, but that design is a sort of "science stopper." In fact, design theorist William Dembski sees Raff's arguments as typifying the reasons for the exclusion of design from science: "What has kept design outside the scientific mainstream these last 130 years is the absence of precise methods for distinguishing intelligently caused objects from unintelligently caused ones. For design to be a fruitful scientific theory, scientists have to be sure they can reliably determine whether something is designed. Johannes Kepler, for instance, thought the craters on the moon were intelligently designed by moon dwellers. We now know the craters were formed naturally. This fear of falsely attributing something to design only to have it overturned later has prevented design from entering science proper."[80] Dembski understands Raff's sort of concerns. What would solve Raff's problem, however, would be a rigorous criteria which allows scientists to know when to detect and infer design, and when not to. If such a method could be found, then what is best explained naturally remains explained naturally, while what is best explained through design, becomes explained through design. As Dembski subsequently says, "[w]ith precise methods for discriminating intelligently from unintelligently caused objects, scientists are now able to avoid Kepler's mistake." (Dembsk in Mere Creation)

    In calling what Kepler did a "mistake," Dembski shows that he doesn't want intelligent design theory to take over biology or all of science science. Intelligent design theorists want design to be inferred where the evidence warrants--no more, and no less. The methods of ID theorists ensure that we will exclusively infer design only if it appears to be what is produced by an intelligent agent, and we know that other causal mechanisms are incapable of producing the data. If the evidence points to evolution, and that has non-scientific religious implications away from theism, so be it. If the empirical evidence points to design so be it. The important thing is to follow the evidence wherever it leads! That's the glory of science!

    Avenues of Research Opened by intelligent design theory:

    William Dembski  offers the following philosophical and/or scientific avenues of investigation that could follow from research into intelligent design theory:[81]

    • 1. Detectability Problem --- How is design detected?
    • 2. Functionality Problem --- What is a designed object's function?
    • 3. Transmission Problem --- How does an object's design trace back historically? (search for narrative)
    • 4. Construction Problem --- How was a designed object constructed?
    • 5. Reverse-Engineering Problem --- How could a designed object have been constructed?
    • 6. Perturbation Problem --- How has the original design been modified and what factors have been modified?
    • 7. Variability Problem --- What degree of perturbation allows continued functioning?
    • 8. Restoration Problem --- Once perturbed, how can original design be recovered?
    • 9. Constraints Problem --- What are the constraints within which a designed object functions well and outside of which it breaks?
    • 10. Optimality Problem --- In what way is the design optimal?
    • 11. Ethical Problem --- Is the design morally right?
    • 12. Aesthetic Problem --- Is the design beautiful?
    • 13. Intentionality Problem --- What was the intention of the designer?
    • 14. Identity Problem --- Who is the designer?

    Elsewhere, Dembski outlined a research program for design in detail in "Three Frequently Asked Questions about Intelligent Design":[82]

    What research topics does a design-theoretic research program?

    • Methods of Design Detection. Methods of design detection are widely employed in various special sciences (e.g., archeology, cryptography, and the Search for Extraterrestrial Intelligence or SETI). Design theorists investigate the scope and validity of such methods.

    • Biological Information. What is the nature of biological information? How do function and fitness relate to it? What are the obstacles that face material mechanisms in attempting to generate biological information? What are the theoretical and empirical grounds for thinking that intelligence is indispensable to the origin of biological information?

    • Evolvability. Evolutionary biology’s preferred research strategy consists in taking distinct biological systems and finding similarities that might be the result of a common evolutionary ancestor. Intelligent design, by contrast, focuses on a different strategy, namely, taking individual biological systems and perturbing them (both intelligently and randomly) to see how much the systems can evolve. Within this latter research strategy, limitations on evolvability by material mechanisms constitute indirect confirmation of design.

    • Evolutionary Computation. Organisms employ evolutionary computation to solve many of the tasks of living (cf. the immune system in vertebrates). But does this show that organisms originate through some form of evolutionary computation (as through a Darwinian evolutionary process)? Are GPGAs (General Purpose Genetic Algorithms) like the immune system designed or the result of evolutionary computation? Need these be mutually exclusive? Evolutionary computation occurs in the behavioral repertoire of organisms but is also used to account for the origination of certain features of organisms. Design theorists explore the relationship between these two types of evolutionary computation as well as any design intrinsic to them. One aspect of this research is writing and running computer simulations that investigate the scope and limits of evolutionary computation. One such simulation is the MESA program (Monotonic Evolutionary Simulation Algorithm) by William Dembski. It is available online at www.iscid.org/mesa.

    • Technological Evolution (TRIZ). The only well-documented example we have of the evolution of complex multipart integrated functional systems (as we see in biology) is the technological evolution of human inventions. In the second half of the twentieth century, Russian scientists and engineers studied hundreds of thousands of patents to determine how technologies evolve. They codified their findings in a theory to which they gave the acronym TRIZ, which in English translates to Theory of Inventive Problem Solving (see Semyon 3 Savransky, Engineering of Creativity: Introduction to TRIZ Methodology of Inventive Problem Solving, CRC Publishers, 2000). The picture of technological evolution that emerges out of TRIZ parallels remarkably the history of life as we see it in the fossil record and includes the following: (1) New technologies (cf. major groups like phyla and classes) emerge suddenly as solutions to inventive problems. Such solutions require major conceptual leaps (i.e., design). As soon as a useful new technology is developed, it is applied immediately and as widely as possible (cf. convergent evolution). (2) Existing technologies (cf. species and genera) can, by contrast, be modified by trial-anderror tinkering (cf. Darwinian evolution), which amounts to solving routine problems rather than inventive problems. (The distinction between routine and inventive problems is central to TRIZ. In biology, irreducible complexity suggests one way of making the analytic cut between these types of problems. Are there other ways?) (3) Technologies approach ideality (cf. local optimization by means of natural selection) and thereafter tend not change (cf. stasis). (4) New technologies, by supplanting old technologies, can upset the ideality and stasis of the old technologies, thus forcing them to evolve in new directions (requiring the solution of new inventive problems, as in an arms race) or by driving them to extinction. Mapping TRIZ onto biological evolution provides a especially promising avenue of design theoretic research.

    • Strong Irreducible Complexity of Molecular Machines and Metabolic Pathways. For certain enzymes (which are themselves highly complicated molecular structures) and metabolic pathways (i.e., systems of enzymes where one enzyme passes off its product to the next, as in a production line), simplification leads not to different functions but to the complete absence of all function. Systems with this feature exhibit a strengthened form of irreducible complexity. Strong irreducible complexity, as it may be called, entails that no Darwinian account can in principle be given for the emergence of such systems. Theodosius Dobzhansky, one of the founders of the neo-Darwinian synthesis, once remarked that to talk about prebiotic natural selection is a contradiction in terms—the idea being that selection could only select for things that are already functional. Research on strong irreducible complexity finds and analyzes biological systems that cannot in principle be grist for natural selection’s mill. For this research, which is only now beginning, to be completely successful would imply the unraveling of molecular Darwinism.

    • Natural and Artificial Biological Design (Bioterrorist Genetic Engineering). We are on the cusp of a bioengineering revolution whose fallout is likely to include bioterrorism. Thus we can expect to see bioterror forensics emerge as a practical scientific discipline. How will such forensic experts distinguish the terrorists’ biological designs from naturally occurring biological designs?

    • Design of the Environment and Ecological Fine-Tuning. The idea that ecosystems are fine-tuned to support a harmonious balance of plant and animal life is old. How does this balance come about. Is it the result of blind Darwinian forces competing with one another and leading to a stable equilibrium? Or is there design built into such ecosystems? Can such ecosystems be improved through conscious design or is “monkeying” with such systems invariably counterproductive? Design-theoretic research promises to become a significant factor in scientific debates over the environment.

    • Steganographic Layering of Biological Information. Steganography belongs to the field of digital data embedding technologies (DDET), which also include information hiding, steganalysis, watermarking, embedded data extraction, and digital data forensics. 4 Steganography seeks efficient (high data rate) and robust (insensitive to common distortions) algorithms that can embed a high volume of hidden message bits within a cover message (typically imagery, video, or audio) without their presence being detected. Conversely, steganalysis seeks statistical tests that will detect the presence of steganography in a cover message. Key research question: To what degree do biological systems incorporate steganography, and if so, is biosteganography demonstrably designed?

    • Cosmological Fine-Tuning and Anthropic Coincidences. Although this is a well worn area of study, there are some new developments here. Guillermo Gonzalez, assistant professor of physics and astronomy at Iowa State University, and Jay Richards, a senior fellow with Seattle’s Discovery Institute, have a forthcoming book titled The Privileged Planet (along with a video based on the book) in which they make a case for planet earth as intelligently designed not only for life but also for scientific discovery. In other words, they argue that our world is designed to facilitate the scientific discovery of its own design. Aspects of Gonzalez’s work in this area have been featured on the cover story of the October 2001 Scientific American.

    • Astrobiology, SETI, and the Search for a General Biology. What might life on other planets look like? Is it realistic to think that there is life, and even conscious life, on other planets? What are the defining features that any material system must possess to be alive? How simple can a material system be and still be alive (John von Neumann posed this question over half a century ago in the context of cellular automata)? Insofar as such systemsdisplay intelligent behavior, must that intelligence be derived entirely from its material constitution or can it transcend yet nevertheless guide its behavior (cf. the mechanism vs. vitalism debate)? Is there a testable way to decide this last question? How, if at all, does quantum mechanics challenge a purely mechanistic conception of life? Design theorists are starting to investigate these questions.

    • Consciousness, Free Will, and Mind-Brain Studies. Is conscious will an illusion—we think that we have acted freely and deliberately toward some end, but in fact our brain acted on its own and then deceived us into thinking that we acted deliberately. This is the majority position in the cognitive neuroscience community, and a recent book makes just that claim in its title: The Illusion of Conscious Will by Harvard psychologist Daniel Wegner. But there is now growing evidence that consciousness is not reducible to material processes of the brain and that free will is in fact real. Jeffrey Schwartz at UCLA along with quantum physicist Henry Stapp at the Lawrence Berkeley National Laboratory are two of the key researchers presently providing experimental and theoretical support for the irreducibility of mind to brain (see Schwartz’s book The Mind and the Brain: Neuroplasticity and the Power of Mental Force).

    • Autonomy vs. Guidance. Many scientists worry that intelligent design attempts to usurp nature’s autonomy. But that is not the case. Intelligent design is attempting to restore a proper balance between nature’s autonomy and teleologic guidance. Prior to the rise of modern science all the emphasis was on teleologic guidance (typically in the form of divine design). Now the pendulum has swung to the opposite extreme, and all the emphasis is on nature’s autonomy (an absolute autonomy that excludes design). Where is the point of balance that properly respects both, and in which design becomes empirically evident? The search for that balance-point underlies all design-theoretic research. It’s not all design or all nature but a synergy of the two. Unpacking that synergy is the intelligent design research program in a nutshell.
    Thus it can be seen that intelligent design opens up many avenues of research and will in no way stifle scientific investigation. Besides, if it is the accurate description of how life got here, then we should invoke it no matter what the practical consequences may be! In fact, failure to invoke ID may have already hurt scientific progress very badly. In 2003, Scientific American published an extensive article discussing how much "junk-DNA" may have functionality. ("The Gems of "Junk" DNA," Scientific American, Nov. 2003, by W. Wayt Gibbs.) The upshot of the article is that some types of DNA which biologists now see as playing important functional roles in the cell “were immediately assumed to be evolutionary junk” and "long ago written off as irrelevant because they yield no proteins." (emphasis added) The article states that the "assumption [that the DNA was junk] was too hasty" and "[t]he failure to recognize the importance of introns 'may well go down as one of the biggest mistakes in the history of molecular biology.'" (emphasis added) If the article is correct, then evolutionary assumptions caused "one of the biggest mistakes in the history of molecular biology." (emphasis added)

    This incident shows that sometimes expectations and predictions from evolutionary theory may be slowing scientific research. Had intelligent design expectations been at work, we might have had quicker insights the workings of genetics which might even lead to medical advances! Had scientists considered intelligent design, then they may have taken seriously the possibility that these introns had function, and perhaps science would have advanced much quicker in our understanding of the function of various types of non-coding DNA.

    Intelligent design has recently led to insight about the workings of centrioles in the cell. Jonathan Wells writes how he used design expectations to analyze centrioles in the cell: "Instead of viewing centrioles through the spectacles of molecular reductionism and neo-Darwinism, this hypothesis assumes that they are holistically designed to be turbines. Orthogonally oriented centriolar turbines could generate oscillations in spindle microtubules that resemble the motion produced by a laboratory vortexer." (Jonathan Wells, “Do Centrioles Generate a Polar Ejection Force? Rivista di Biologia/Biology Forum 98 (2005): 37-62.) Thus, using a design-engineering approach to biology could lead insights into the workings of the cell. This ID-based insight even has potential applications to better understanding causes of cancer!

    “Do we also want our future scientists to be reluctant to tenaciously investigate the natural world no matter what discoveries and conclusions they reach and no matter what philosophical ideas of design and purpose are rejected? If we as a society answer "Yes," to these questions, then I suppose we are also willing to accept Faith Healing 101 as a legitimate course in medical schools.”  (Tom Demere, paleontologist, San Diego Natural History Museum)


    Response: As noted, intelligent design is not based upon “faith” but is based upon empirical observations of how intelligent agents operate, and studies of natural objects to determine if those objects contain the tell-tale signs that an intelligent agent had been at work. Such a scientific study requires tenacious investigation.  Thus, there is no danger that teaching students about the empirical validity ID would lead to the advocation of religious ideas such as faith healing. In fact, as William Dembski writes, a science curriculum teaching ID would not look very different from current science curricula: "One of the worries about intelligent design is that it will jettison much of what is accepted in science, and that an “ID-based curriculum” will look very different from current science curricula. Although intelligent design has radical implications for science, I submit that it does not have nearly as radical implications for science education. First off, intelligent design is not a form of anti-evolutionism. Intelligent design does not claim that living things came together suddenly in their present form through the efforts of a supernatural creator. Intelligent design is not and never will be a doctrine of creation."[14] Dr. Demere writes about the need for students to "investigate the natural world no matter what discoveries and conclusions they reach and no matter what philosophical ideas of design and purpose are rejected." Yet precisely same charge can be made, with much more force, against evolutioists who are unwilling to follow the evidence where it leads, to design, because they themselves refuse to consider design because of naturalistic assumptions inherent in their own approach to origins. We must be willing to follow the evidence where it leads and consider intelligent design no matter what discoveries and conclusions scientists reach and no matter what philosophical ideas about lack-of-design or purposelessness are rejected.

    Unfotunately, it is exceedingly clear that many scientists reject design a prior not because of evidence, but because of their own philosophical assumptions. Consider these quotes from Darwinists who reject design not because of evidence, but because of naturalistic assumptions they are invoking: “[I]f a living cell were to be made in the laboratory, it would not prove that nature followed the same pathway billions of years ago. But it is the job of science to provide plausible natural explanations for natural phenomena.” (Science and Creationism, A View from the National Academy of Sciences, 2nd Edition (1999), emphasis added)

    “The statements of science must invoke only natural things and processes. ... The theory of evolution is one of these explanations.”(Teaching About Evolution and the Nature of Science, National Academy Press, 1998, pg. 42, emphasis added)

    “It was Darwin’s greatest accomplishment to show that the directive organization of living beings can be explained as the result of a natural process, natural selection, without any need to resort to a Creator or other external agent...[Darwin’s] mechanism, natural selection, excluded God as the explanation...” (Francisco Ayala [evolutionist scientist], “Darwin’s Revolution,” in Creative Evolution?!, eds. J. Campbell and J. Schopf (Boston, Mass.: Jones and Bartlett Publishers, 1994), pp. 4-5, emphasis added)

    "Science, fundamentally, is a game. It is a game with one overriding and defining rule. Rule No. 1: Let us see how far and to what extent we can explain the behavior of the physical and material universe in terms of purely physical and material causes, without invoking the supernatural." (Richard E. Dickerson [evolutionist scientist]: "The Game of Science." Perspectives on Science and Faith (Volume 44, June 1992), p. 137, emphasis added)

    “Darwinism rejects all supernatural phenomena and causations. The theory of evolution by natural selection explains the adaptedness and diversity of the world solely materialistically.” (“Darwin’s Influence on Modern Thought” E. Mayr [evolutionist scientist], Scientific American, pg. 82-83, (July 2000), emphasis added)

    “[F]or many evolutionists, evolution has functioned as something with elements which are, let us say, akin to being a secular religion ... [A]t some very basic level, evolution as a scientific theory makes a commitment to a kind of naturalism, namely, that at some level one is going to exclude miracles and these sorts of things come what may.” ("Nonliteralist Antievolution," Ruse, Michael [evolutionist philosopher of science], AAAS Symposium: "The New Antievolutionism," February, 1993, Boston, MA., emphasis added)

    "[W]e have a prior commitment, a commitment to materialism. It is not that the methods and institutions of science somehow compel us to accept a material explanation of the phenomenal world, but, on the contrary, that we are forced by our a priori adherence to material causes to create an apparatus of investigation and a set of concepts that produce material explanations…that materialism is absolute, for we cannot allow a Divine Foot in the door.” (Lewontin, Richard [evolutionist scientist], "Billions and Billions of Demons", New York Review of Books, January 9, 1997, p. 28., emphasis added)

    “If there is one rule, one criterion that makes an idea scientific, it is that it must invoke naturalistic explanations for phenomena … it’s simply a matter of definition—of what is science, and what is not." (Eldredge, Niles, 1982, The Monkey Business: A Scientist Looks at Creationism, Washington Square Press)

    “…any statement concerning the existence, nonexistence, or nature of a creator or creators is not science by definition and has no place in scientific discussion.” (Pine, R.H., 1984, “But Some of Them Are Scientists, Aren’t They?” Creation/Evolution, Issue XIV, pp. 6-18)
    Thus, it is clearly seen that many evolutionists reject design not because of the evidence, but because of their own philosophical assumptions. Dr. Demere is thus correct: we should not be teaching students to make scientific conclusions because of philosophy. Rather, we should be teaching students to follow the evidence wherever it leads without making any philosophical assumptions. Once freed from the philosophical shackles of naturalism, science will be in a position where it can seriously consider the empirical evidence for design.

    Intelligent design proponents would thus agree with Dr. Demere's comments about the need to let the evidence--not philosophical preferences--guide our research. After all, it was ID proponents who drafted and submitted the "Santorum Resolution" to the U.S. Senate, which sanctioned helping students to recognize when philosophical claims are being made rather than letting the scientific data speak for itself: "It is the sense of the Senate that:  (1) good science education should prepare students to distinguish the data or testable theories of science from philosophical or religious claims that are made in the name of science...[74] Given that ID proponents submitted such legislation to guide curricula on the national level, it seems unlikely that ID proponents are interested in forcing philosophical claims upon science. This resolution, which also sanctioned critical analysis of Darwin's theory in the science classroom, passed with overwhelming a bi-partisan support by a vote of 91-8. To reiterate, we must be willing to follow the evidence where it leads and consider intelligent design no matter what discoveries and conclusions scientists reach and no matter what philosophical ideas about lack-of-design or purposelessness are rejected.

    Response to Comments by Michael Mayer:

    “I don't know of any working scientist who is ready to throw in the towel on any question regarding the life sciences or physical sciences. Certainly, historical events that were not witnessed can never be understood with absolute certainty, but that doesn't mean we can't study them, test hypotheses or construct the most likely interpretation of them.” (Michael Mayer, associate; professor of biology, USD)


    Response: To reiterate, intelligent design is not “throwing in the towel.” Rather, it is acknowledging that various features of nature match what we would expect to find based upon our studies of what intelligent agents tend to produce.    Dr. Mayer is absolutely correct to state that “historical events that were not witnessed can never be understood with absolute certainty, but that doesn't mean we can't study them, test hypotheses or construct the most likely interpretation of them” and this is precisely why intelligent design is a viable scientific hypothesis.   We can look at various aspects of nature and ask “would intelligent design, as an event in the history of life, be the best explanation to account for the origin of this structure?”   Intelligent design asks this simple and compelling question—and simply asks scientists to be willing to follow the evidence wherever it leads!

    Response to Comments by Michael Simpson:

    “I believe this is basically a religious or faith question. It seems to me that many who support this notion of intelligent design are doing so to bolster their own religious beliefs, specifically that there is a God, a divine creator. They are disturbed and angry and frightened that what is central in their lives is not generally taught or even mentioned in public schools, and they might view science in general (and evolutionary theory specifically) as a threat, e.g., to a particular set of religious beliefs.   I do respect those who are searching for something beyond themselves, something meaningful in their lives. This is part of the human quest, to seek the mystery of existence. It is a noble and worthy goal. But, it is also important to have clear and critical thinking, a means of checking ourselves, detecting bias against preconceived notions. There is a great deal of hokum out there. A few hundred years ago, the majority of people in the Western world believed in demons and regularly used them and other superstitious beliefs to justify their behavior and power over others.   I think it is possible to be both spiritual and a critical thinker: To use one's mind (the scientific method and common sense) in evaluating specific beliefs or claims or ideas, and yet to also seek that question of existence and continually embrace the wonder and awesome mystery of this world.”  (Michael Simpson, professor of biology, SDSU)


    Response: Dr. Simpson gets some things wrong here, but also gets many things right here.   He is wrong to think that intelligent design is based upon superstition or that it is “hokum.”   Intelligent design is based upon empirical arguments which use the scientific method.  Intelligent design proponents make their arguments for scientific reasons, and do not base their arguments upon religions assumptions.  

    However, Dr. Simpson is right that for many people, this is a religious/faith question.  For example, prominent evolutionary scientists Stephen Jay Gould and Richard Dawkins rely upon their belief in evolution to bolster their materialist worldviews.   “Materialism” entails the belief that nothing other than the blind and unguided forces of nature are responsible for our existence.  For years, some leading scientific promoters of evolution have advocated that humanity is “the result of a purposeless and natural process that did not have [us] in mind.”[83] Not all evolutionist scientists project such theological views on to their science, but a significant contingency of prominent Darwinists have advocated this ideology.

    The late paleontologist Stephen Jay Gould profoundly impacted American science education, yet himself wrote that Darwin “took away our status as paragons created in the image of God.”[84] According to Gould, although “we may yearn for a ‘higher’ answer” than evolution, in fact, “none exists.”[85]   Intellectuals on the other side of the Atlantic seem to concur.  Richard Dawkins, the Charles Simonyi Professor of the Public Understanding of Science at Oxford University, presses the public to understand that “ Darwin made it possible to be an intellectually fulfilled atheist.”[86]  

    Simpson is also right that the way evolution is presented in schools sometimes genuinely threatens the religious beliefs of some students.  Unfortunately, the notion that evolution has ideological implications resides not only in the minds of the scientific elite.  In 1995, the National Association of Biology Teachers (NABT) called  evolution an “unsupervised, impersonal, unpredictable and natural process.”[87]   So explicit was this theological language that Eugenie Scott had to lobby the NABT to change its definition so the teaching of evolution would not be threatened[88] because it so clearly was putting anti-theistic theology into schools.

    Unfortunately, the NABT’s mindset has infiltrated textbooks.  Miller and Levine's Biology once explained that the evolutionary processes which created us are “random and undirected” and “wor[k] without either plan or purpose.”[89]  A popular college textbook, Evolutionary Biology, explicitly promotes ideology: “By coupling undirected, purposeless variation to the blind, uncaring process of natural selection, Darwin made theological or spiritual explanations of the life processes superfluous. ... Darwin's theory of evolution … provided a crucial plank in the platform of mechanism and materialism…”[90]

    Admittedly, Dawkins, Gould, and Futuyma represent an extreme end of the spectrum. Polls of scientists consistently reveal that many find room to believe in both God and evolution.  Additionally, the field of evolutionary biology has a strong scientific basis and many of its researchers do legitimate and fruitful work without any ideological bent.  Yet with such a cadre of prominent Darwinists telling the public that evolution makes God irrelevant, there is no doubt that much ideology orbits the promotion of Darwin’s theory.[91]   Perhaps this explains why a 1999 poll of biologists elected to the National Academy of Scientists found that over 95% professed no belief in God.[92]

    Dr. Simpson is also correct that we need to be informed and critical thinkers.  This is why it is crucial that students learn to approach Darwin's theory with a critical mindset and not simply memorize it as blind fact. The National Science Education Standards concur with this approach in that they recommend that students engage in “identification of assumptions, use of critical and logical   thinking, and consideration of alternative explanations.”[73] Regarding the need to be informed, Dr. Simpson's tone is ironic given that few of the scientists quoted on intelligent design in this article seem to actually be capable of accurately describing intelligent design theory.  Additionally, he is very correct that we need to correct our own biases.

    In 2001, ID proponents submitted to the U.S. Senate a resolution which encouraged that students need to learn to distinguish between religion or philosophy disguised as science, and genuine scientific claims.   This “Santorum Amendment” passed with overwhelming bipartisan support and stated that students should learn   “to distinguish the data or testable theories  of science from philosophical or religious claims that are made in the  name of science.” Thus, ID proponents want students to not learn philosophy in the name of science. Indeed, ID proponents submitted this legislation to the U.S. Senate. However, it seems that some of those quoted in this article have harsh biases against intelligent design.

    Additionally, it is very possible to be a critical thinker and a spiritual person at the same time.  In fact, many ID proponents encourage thinking critically about Darwin’s theory and themselves are quite spiritual in their outlook on life.  Interestingly, however, many of the scientists quoted in the Union Tribune article were unwilling or incapable of thinking critically about Neo-Darwinism. Thus, Dr. Simpson’s words should be heeded by all.   Evolutionists included.  

    Thank you very much for reading!
    -IDEA Center Staff

    References Cited:

    [2] Stephen C. Meyer, "The Explanatory Power of Design," in Mere Creation, pg. 140 (William A. Dembski ed., InterVarsity Press 1998).

    [3] Stephen C. Meyer, “The Cambrian Information Explosion,” Debating Design, pg. 388 (Dembski and Ruse eds., Cambridge University Press 2004).

    [4] Stephen C. Meyer, DNA and Other Designs. (http://www.arn.org/docs/meyer/sm_dnaotherdesigns.htm)

    [5] (Meyer S. C. et. al., "The Cambrian Explosion: Biology's Big Bang," in Darwinism, Design, and Public Education, edited by J. A. Campbell and S. C. Meyer (Michigan State University Press, 2003)

    [6] (Nelson and Wells, Homology in Biology, in Darwinism, Design, and Public Education, pg. 316, 318 (John Angus Campbell, ed. Michigan State University Press 2003).

    [7] See Edwards v. Aguillard, 482 U.S. 578 (1987).

    [8] William Dembski, The Design Revolution, pg. 42.

    [9] Of Pandas and People (2nd ed, 1993), pg. 7, emphasis added.

    [10] Of Pandas and People (2nd ed, 1993), pg. 126-127, emphasis added.

    [11] Of Pandas and People (2nd ed, 1993), pg. 161, emphasis added.

    [12] Michael Behe, "The Modern Intelligent Design Hypothesis," Philosophia Christi, Series 2, Vol. 3, No. 1 (2001), pg. 165, emphasis added.

    [13] Michael Behe, Pittsburgh Post-Gazette, 02/08/01.

    [14] William Dembski, No Free Lunch, pg. 314, emphasis added.

    [15] Michael Behe, Darwin's Black Box, pg. 197.

    [16] William Dembski, The Design Revolution, pg. 40.

    [17] William Dembski, The Design Revolution, pg. 42-43.

    [19] William Dembski, The Design Revolution, pg. 42-43.

    [20] William Dembski, No Free Lunch, pg. 223.

    [21] William Dembski, The Design Revolution, pg. 42-43.

    [22] Richard Dawkins, The Blind Watchmaker, pg. 18 (W.W. Norton, 1996 edition.

    [23] “The origin of biological information and the higher taxonomic categories," by Stephen C. Meyer, Proceedings of the Biological Society of Washington 117(2) (August, 2004):213-39

    [24] See M.J. Behe and D.W. Snoke, “Simulating Evolution by Gene Duplication of Protein Features That Require Multiple Amino Acid Residues,” Protein Science, 13 (2004): 2651-2664.

    [25] Eldredge, N., Reinventing Darwin, p. 95 (1995)

    [26] Carroll, R., Patterns and Processes of Vertebrate Evolution, pgs. 8-10 (1997).

    [27] Pagel M., "Happy accidents?," Nature, Vol 397, pg. 665 (February 25, 1999).

    [28] Mayr, E., What Evolution Is, pg. 189 (2001).

    [29] Denton, M., Evolution: A Theory in Crisis, pg. 193 (1986).

    [30] Ohno, S., "The notion of the Cambrian pananimalia genome," Proc. Nat. Acad. Sci. USA, Vol 93 pg. 8475-8478 (August 1996).

    [31] Barnes, R.S.K., P. Calow, P.J.W. Olive, D.W. Golding, J.I. Spicer. The Invertebrates: A New Synthesis 3rd Ed. (2001)

    [32] Richard Dawkins, The Blind Watchmaker, pg. 229 (W.W. Norton, 1996 edition).

    [33] William Dembski, The Design Revolution, pg. 45.

    [34] Dembski, The Design Revolution, pg. 45.

    [35] Stephen C. Meyer, "The Explanatory Power of Design," in Mere Creation, pg. 140 (William A. Dembski ed., InterVarsity Press 1998).

    [36] Stephen C. Meyer, “The Cambrian Information Explosion,” Debating Design, pg. 388 (Dembski and Ruse eds., Cambridge University Press 2004).

    [37] Stephen C. Meyer, DNA and Other Designs. (http://www.arn.org/docs/meyer/sm_dnaotherdesigns.htm)

    [38] Richard Dawkins, The Blind Watchmaker, pg. 230.

    [39] Richard Dawkins, The Blind Watchmaker, pg. 6.

    [40] William Dembski, The Design Revolution, pg. 46.

    [41] Stephen C. Meyer, DNA and Other Designs, http://www.arn.org/docs/meyer/sm_dnaotherdesigns.htm.

    [42] Senior writer for Scientific American, John Horgan, The End of Science: Facing the Limits of Knowledge in the Twilight of the Scientific Age, Little, Brown & Co: London, 1997, p138.

    [43] Dose, Klaus, "The Origin of Life: More Questions Than Answers," Interdisciplinary Science Reviews, Vol. 13, No. 4, 1988, p.348.

    [44] Charles Darwin, The Origin of Species, ed. J. W. Burrow (London: Penguin Group, 1985), (1859), 219.

    [46] "Prebiotic Synthesis in Atmospheres Containing CH4, CO, and CO2" by S. Miller, G. Schlesinger, Journal of Molecular Evolution 19:376-382 (1983)

    [47] The Origins of Life on the Earth, by S. L. Miller and L. E. Orgel, p. 33 (Englewood Cliffs, Prentice Halt, 1974)

    [48] "Prebiotic Synthesis in Atmospheres Containing CH4, CO, and CO2" by S. Miller, G. Schlesinger, Journal of Molecular Evolution 19:376-382 (1983); The Origins of Life on the Earth, by S. L. Miller and L. E. Orgel, p. 33 (Englewood Cliffs, Prentice Halt, 1974)

    [49] "Chemical Events on the Primitive Earth," P. Abelson, PNAS USA, 55:1365-1372 (1966); "Peptides and the Origin of Life," B. M. Rode, Peptides, 20:773-776 (1999)

    [50] "Prebiotic Synthesis in Atmospheres Containing CH4, CO, and CO2" by S. Miller, G. Schlesinger, Journal of Molecular Evolution 19:376-382 (1983)

    [51] "Prebiotic Synthesis in Atmospheres Containing CH4, CO, and CO2" by S. Miller, G. Schlesinger, Journal of Molecular Evolution 19:376-382 (1983). , Phillip Abelson, "Discussion of a Paper by Stanley Miller," Annals of New York Academy of Sciences69 (1957) 274-275); Sidney W. Fox & Klause Doxe, Molecular Evolution ahd the Origin of Life, Revised ed. (1977); Henrich D. Holland, The Chemical Evolution of the Atmosphere and Oceans, (1984); Shapiro, R., Origins: A Skeptic’s Guide to the Creation of Life on Earth (1986).

    [52] Statements made by Dr. Edward Peltzer, at the IDEA Conference 2002. Dr. Peltzer obtained his doctorate degree under Stanley Miller in 1979; Seven Clues to the Origin of Life: A Scientific Detective Story, A.G. Cairns-Smith, pg. 44-45 (Cambridge University Press, 1993).

    [53] Levy, Matthew and Stanley Miller. The Stability of the RNA bases: Implications for the origin of life. Proceedings of National Academy of Science, USA (Vol. 95, pg. 7933-7938)

    [54] Levy, Matthew and Stanley Miller. The Stability of the RNA bases: Implications for the origin of life. Proceedings of National Academy of Science, USA (Vol. 95, pg. 7933-7938); Canuto V. M., Levine, J. S., Augustsson, T. R., Imhoff, C. L., Giampapa, M. S. "The young Sun and the atmosphere and photochemistry of the early Earth". Nature Vol 305, September 22, 1983, pg. 281-286; Denton, Michael. Evolution: A Theory in Crisis (Bethesda, Md.: Adler and Adler, 1985), pg. 261)

    [55] The Search for Life's Origins. National Research Council Space Studies Board, National Academy Press: Washington D.C., 1990, pg. 66, 67, 126).

    [56] Chemical Events on the Primitive Earth," P. Abelson, PNAS USA, 55:1365-1372 (1966).

    [57] "The prebiotic synthesis of organic compounds as a step toward the origin of life," S. L. Miller, Major Events in the History of Life (London: Jones and Bartlett Publishers, 1992)

    [58] Levy, Matthew and Stanley Miller. The Stability of the RNA bases: Implications for the origin of life. Proceedings of National Academy of Science, USA (Vol. 95, pg. 7933-7938);Lazcano, A., 1997. The tempo and modes of prebiotic evolution. In: Cosmovici,C.B., Bowyer, S., Wertheimer, D. Eds., Astronomical and Biochemical Origins and the Search for Life in the Universe. Editrice Compositori, pp. 419­430

    [59] Schopf, J. William in Exobiology (edited by Cyril Ponnamperuma), North-Holland Publishing Company: Amsterdam-London, 1972 in the Precambrian paleobiology chapter, Pg. 27.

    [60]Lasaga, Antonio, H. D. Holland, M. J. Dwyer. "Primordial Oil Slick". Science vol 174, Oct 4, 1971 pg. 53-55

    [61] Biogenesis: Theories of Life's Origins, N. Lahav, p138-139 (Oxford University Press, 1999).

    [62] "Chemical Events on the Primitive Earth," P. Abelson, PNAS USA, 55:1365-1372 (1966).

    [63] The Search for Life's Origins. National Research Council Space Studies Board, National Academy Press: Washington D.C., 1990, pg. 66, 67, 126)

    [64] Lewontin, R., "Billions and Billions of Demons," The New York Review, January 1997, p. 31.

    [65] The Myth of the Flat Earth by Jeffrey Burton Russell, available at http://www.id.ucsb.edu/fscf/LIBRARY/RUSSELL/FlatEarth.html.

    [66] The Myth of the Flat Earth by Jeffrey Burton Russell, available at http://www.id.ucsb.edu/fscf/LIBRARY/RUSSELL/FlatEarth.html.

    [67] Debating Design (William A. Dembski & Michael Ruse eds., Cambridge University Press 2004). Another similar of a scholarly publication advocating ID theory is William Dembski’s The Design Inference (Cambridge University Press 1998).

    [68] Stephen C. Meyer, “The origin of biological information and the higher taxonomic categories," Proceedings of the Biological Society of Washington 117(2) (August, 2004):213-39; Michael J. Behe and David W. Snoke, “Simulating evolution by gene duplication of protein features that require multiple amino acid residues,” Protein Science, 13 (2004); Jonathan Wells, “Do Centrioles Generate a Polar Ejection Force,” Rivista di Biologia / Biology Forum 98 (2005):71-96.

    [69] Charles Darwin, The Origin of Species, ed. J. W. Burrow (London: Penguin Group, 1985), (1859), 219.

    [70] Id.

    [71] Michael J. Behe, Darwin’s Black Box 51-73 (Free Press, 1996).

    [72] Richard Dawkins, The Blind Watchmaker 229 (W.W. Norton, 1996 edition).

    [73] National Research Council, National Science Education Standards (National Academy Press, 1996), 23.

    [74] Congressional Record, 107th Cong., 1st sess., 2001, pt. 147:S6147-53  (amendment submitted by Sen. Santorum); this resolution passed with overwhelming bi-partisan support with a vote of 91-8 in the U.S. Senate.

    [75] Charles Darwin, The Origin of Species, ed. J. W. Burrow (London: Penguin Group, 1985), (1859), 66.

    [76] Stephen C. Meyer, "The Explanatory Power of Design," in Mere Creation, pg. 140 (William A. Dembski ed., InterVarsity Press 1998).

    [77] Stephen C. Meyer, “The Cambrian Information Explosion,” Debating Design, pg. 388 (Dembski and Ruse eds., Cambridge University Press 2004.

    [78] Stephen C. Meyer, DNA and Other Designs (http://www.arn.org/docs/meyer/sm_dnaotherdesigns.htm).

    [79] Raff, Rudolf A., "The creationist abuse of evo-devo." Evol Dev, 3(6): 373-374 (2001).

    [80] Dembski, W. A., "Introduction: Mere Creation", Mere Creation Science Faith & Intelligent Design, (InterVarsity Press, 1998) pg. 16.

    [81] Design as a Research Program: 14 Questions to Ask About Design (http://www.discovery.org/viewDB/index.php3?program=CRSC%20Responses&command=view&id=259

    [82] http://www.designinference.com/documents/2003.09.ID_FAQ.pdf

    [83] George Gaylord Simpson, The Meaning of Evolution 179 (Yale University Press 1949). While Simpson goes on to say that it is “a gross misrepresentation to say we are just an accident or nothing but an animal,” his ultimate view is that that “[p]lan, purpose, goal, all absent in evolution to this point, enter with the coming of man and are inherent in the new evolution, which is confined to him.” Whether or not such a view is correct, it is strikingly at odds with traditional Western theism.

    [84] Stephen Jay Gould, Ever Since Darwin 147 (W.W. Norton 1977).

    [85] Stephen Jay Gould quoted in The Meaning of Life 84 (David Friend and the Editors of Life Magazine eds., Little, Brown and Co. 1991).

    [86] Richard Dawkins, The Blind Watchmaker 6 (W.W. Norton, 1996 edition).

    [87] See “NABT Unveils New Statement on Teaching Evolution,” 58 American Biology Teacher 61-62 (January, 1996). 

    [88] See Karl W. Giberson & Donald A Yerxa, Species of Origins America’s Search for a Creation Story 6-7 (Rowman & Littlefield 2002); Michael N. Keas and Stephen C. Meyer, The Meaning of Evolution, discovery.org/scripts.viewDB/filesDB-download.php?id=305 (last visited June 14, 2005).

    [89] Kenneth R. Miller & Joseph Levine, Biology 658 (Prentice Hall 4th ed. 1998).

    [90] Douglas J. Futuyma, Evolutionary Biology 5 (Sinauer Associates Inc., 1998).

    [91] “Theory” is used with the understanding that the scientific community generally employs the term according to its technical definition as “a well-substantiated explanation of some aspect of the natural world that can incorporate facts, laws, and tested hypotheses.” National Academy of Sciences, Science and Creationism: A view from the National Academy of Sciences, 2nd ed. (National Academy Press, 1999), 2.

    [92] Edward J. Larson & Larry Witham, “Scientists and Religion in America,” 281 Scientific American (September, 1999):88-93.